Multiple platform build/check report for BioC 3.21 - INSTALL results for Repitools on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4833
merida1	macOS 12.7.6 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4614
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4555
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4586
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for Repitools on kunpeng2

To the developers/maintainers of the Repitools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: Repitools

Version: 1.54.0

Command: /home/biocbuild/R/R/bin/R CMD INSTALL Repitools

StartedAt: 2025-10-13 20:46:33 -0000 (Mon, 13 Oct 2025)

EndedAt: 2025-10-13 20:47:28 -0000 (Mon, 13 Oct 2025)

EllapsedTime: 55.2 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL Repitools
###
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* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘Repitools’ ...
** this is package ‘Repitools’ version ‘1.54.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -D R_NO_REMAP -I. -fPIC  -g -O2  -Wall -Werror=format-security -c const.c -o const.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -D R_NO_REMAP -I. -fPIC  -g -O2  -Wall -Werror=format-security -c hyp2f1.c -o hyp2f1.o
hyp2f1.c: In function ‘hyp2f1’:
hyp2f1.c:126:8: warning: old-style function definition [-Wold-style-definition]
  126 | double hyp2f1( a, b, c, x )
      |        ^~~~~~
hyp2f1.c: In function ‘hyt2f1’:
hyp2f1.c:294:9: warning: old-style function definition [-Wold-style-definition]
  294 |  double hyt2f1( a, b, c, x, loss )
      |         ^~~~~~
hyp2f1.c: In function ‘hys2f1’:
hyp2f1.c:438:9: warning: old-style function definition [-Wold-style-definition]
  438 |  double hys2f1( a, b, c, x, loss )
      |         ^~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function ‘SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)’:
mmeansd.cpp:33:24: warning: variable ‘is’ set but not used [-Wunused-but-set-variable]
   33 |     int * x, nval, hs, is, i;
      |                        ^~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -D R_NO_REMAP -I. -fPIC  -g -O2  -Wall -Werror=format-security -c mtherr.c -o mtherr.o
mtherr.c: In function ‘mtherr’:
mtherr.c:77:5: warning: old-style function definition [-Wold-style-definition]
   77 | int mtherr( name, code )
      |     ^~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -D R_NO_REMAP -I. -fPIC  -g -O2  -Wall -Werror=format-security -c ringo_stuff.c -o ringo_stuff.o
ringo_stuff.c:13:24: warning: ‘Ringo_calls’ defined but not used [-Wunused-variable]
   13 | static R_CallMethodDef Ringo_calls[] = {
      |                        ^~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o Repitools.so const.o hyp2f1.o mmeansd.o mtherr.o ringo_stuff.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-Repitools/00new/Repitools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Repitools)