Johannes Griss
| Snapshot Date: 2025-08-07 13:40 -0400 (Thu, 07 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/ReactomeGSA |
| git_branch: RELEASE_3_21 |
| git_last_commit: 6e8adbb |
| git_last_commit_date: 2025-04-15 11:49:59 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-11 11:48 -0400 (Mon, 11 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1728/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ReactomeGSA 1.22.0 (landing page) Johannes Griss
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the ReactomeGSA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: ReactomeGSA |
| Version: 1.22.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA |
| StartedAt: 2025-08-08 03:42:15 -0000 (Fri, 08 Aug 2025) |
| EndedAt: 2025-08-08 03:45:34 -0000 (Fri, 08 Aug 2025) |
| EllapsedTime: 199.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
###
##############################################################################
##############################################################################
* checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK
* preparing ‘ReactomeGSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown
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Quitting from analysing-scRNAseq.Rmd:180-182 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `start_reactome_analysis()`:
! Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
---
Backtrace:
▆
1. ├─ReactomeGSA::analyse_sc_clusters(jerby_b_cells, verbose = TRUE)
2. └─ReactomeGSA::analyse_sc_clusters(jerby_b_cells, verbose = TRUE)
3. └─ReactomeGSA (local) .local(...)
4. └─ReactomeGSA::perform_reactome_analysis(request, verbose = verbose)
5. └─ReactomeGSA::start_reactome_analysis(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'analysing-scRNAseq.Rmd' failed with diagnostics:
Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
--- failed re-building ‘analysing-scRNAseq.Rmd’
--- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown
Quitting from reanalysing-public-data.Rmd:89-94 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `wait_for_loading_dataset()`:
! Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
---
Backtrace:
▆
1. └─ReactomeGSA::load_public_dataset(dataset_search_entry, verbose = TRUE)
2. └─ReactomeGSA:::wait_for_loading_dataset(request, verbose, reactome_url)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'reanalysing-public-data.Rmd' failed with diagnostics:
Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
--- failed re-building ‘reanalysing-public-data.Rmd’
--- re-building ‘using-reactomegsa.Rmd’ using rmarkdown
Quitting from using-reactomegsa.Rmd:203-205 [perform_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `start_reactome_analysis()`:
! Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
---
Backtrace:
▆
1. └─ReactomeGSA::perform_reactome_analysis(...)
2. └─ReactomeGSA::start_reactome_analysis(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using-reactomegsa.Rmd' failed with diagnostics:
Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
--- failed re-building ‘using-reactomegsa.Rmd’
SUMMARY: processing the following files failed:
‘analysing-scRNAseq.Rmd’ ‘reanalysing-public-data.Rmd’
‘using-reactomegsa.Rmd’
Error: Vignette re-building failed.
Execution halted