Kevin Blighe
| Snapshot Date: 2025-02-10 13:40 -0500 (Mon, 10 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/PCAtools |
| git_branch: devel |
| git_last_commit: fb5bb35 |
| git_last_commit_date: 2024-10-29 10:33:59 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-11 11:44 -0500 (Tue, 11 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4719 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4480 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4491 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4444 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1521/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PCAtools 2.19.0 (landing page) Kevin Blighe
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the PCAtools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PCAtools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: PCAtools |
| Version: 2.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PCAtools |
| StartedAt: 2025-02-10 17:13:12 -0500 (Mon, 10 Feb 2025) |
| EndedAt: 2025-02-10 17:13:39 -0500 (Mon, 10 Feb 2025) |
| EllapsedTime: 27.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PCAtools ### ############################################################################## ############################################################################## * checking for file ‘PCAtools/DESCRIPTION’ ... OK * preparing ‘PCAtools’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘PCAtools.Rmd’ using rmarkdown 2025-02-10 17:13:37.952 R[89844:484444482] XType: Using static font registry. Quitting from lines 162-212 [unnamed-chunk-5] (PCAtools.Rmd) Error: processing vignette 'PCAtools.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘PCAtools.Rmd’ SUMMARY: processing the following file failed: ‘PCAtools.Rmd’ Error: Vignette re-building failed. Execution halted