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This page was generated on 2025-02-15 11:40 -0500 (Sat, 15 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4720
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4482
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4493
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4446
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1334/2295HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MsBackendMetaboLights 1.1.0  (landing page)
Johannes Rainer
Snapshot Date: 2025-02-14 13:40 -0500 (Fri, 14 Feb 2025)
git_url: https://git.bioconductor.org/packages/MsBackendMetaboLights
git_branch: devel
git_last_commit: 36596b1
git_last_commit_date: 2024-10-29 11:34:31 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for MsBackendMetaboLights on nebbiolo1

To the developers/maintainers of the MsBackendMetaboLights package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendMetaboLights.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MsBackendMetaboLights
Version: 1.1.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendMetaboLights
StartedAt: 2025-02-14 18:06:05 -0500 (Fri, 14 Feb 2025)
EndedAt: 2025-02-14 18:06:22 -0500 (Fri, 14 Feb 2025)
EllapsedTime: 17.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendMetaboLights
###
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* checking for file ‘MsBackendMetaboLights/DESCRIPTION’ ... OK
* preparing ‘MsBackendMetaboLights’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsBackendMetaboLights.Rmd’ using rmarkdown

Quitting from lines 79-83 [unnamed-chunk-3] (MsBackendMetaboLights.Rmd)
Error: processing vignette 'MsBackendMetaboLights.Rmd' failed with diagnostics:
Failed to connect to MetaboLights. No internet connection? Does the data set "MTBLS39" exist?
 - cannot open the connection
--- failed re-building ‘MsBackendMetaboLights.Rmd’

SUMMARY: processing the following file failed:
  ‘MsBackendMetaboLights.Rmd’

Error: Vignette re-building failed.
Execution halted