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This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1004/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HybridExpress 1.4.0  (landing page)
Fabricio Almeida-Silva
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/HybridExpress
git_branch: RELEASE_3_21
git_last_commit: 1a50aa0
git_last_commit_date: 2025-04-15 13:31:05 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for HybridExpress on kunpeng2

To the developers/maintainers of the HybridExpress package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HybridExpress.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: HybridExpress
Version: 1.4.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HybridExpress
StartedAt: 2025-10-14 01:43:26 -0000 (Tue, 14 Oct 2025)
EndedAt: 2025-10-14 01:44:51 -0000 (Tue, 14 Oct 2025)
EllapsedTime: 85.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HybridExpress
###
##############################################################################
##############################################################################


* checking for file ‘HybridExpress/DESCRIPTION’ ... OK
* preparing ‘HybridExpress’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HybridExpress.Rmd’ using rmarkdown

Quitting from HybridExpress.Rmd:402-405 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Can't find method for generic `&(e1, e2)`:
- e1: <patchwork>
- e2: <theme>
---
Backtrace:
    ▆
 1. └─HybridExpress::plot_expression_partitions(exp_partitions, group_by = "Class")
 2.   ├─patchwork::wrap_plots(...)
 3.   │ └─patchwork:::is_valid_plot(..1)
 4.   │   └─ggplot2::is.ggplot(x)
 5.   │     └─ggplot2::is_ggplot(x)
 6.   │       └─S7::S7_inherits(x, class_ggplot)
 7.   └─S7:::Ops.S7_object(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HybridExpress.Rmd' failed with diagnostics:
Can't find method for generic `&(e1, e2)`:
- e1: <patchwork>
- e2: <theme>
--- failed re-building ‘HybridExpress.Rmd’

SUMMARY: processing the following file failed:
  ‘HybridExpress.Rmd’

Error: Vignette re-building failed.
Execution halted