Multiple platform build/check report for BioC 3.21 - BUILD results for ChAMP on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4832
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4613
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4554
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4585
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ChAMP on nebbiolo1

To the developers/maintainers of the ChAMP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChAMP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ChAMP

Version: 2.38.1

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChAMP

StartedAt: 2025-10-08 16:42:24 -0400 (Wed, 08 Oct 2025)

EndedAt: 2025-10-08 16:44:27 -0400 (Wed, 08 Oct 2025)

EllapsedTime: 123.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChAMP
###
##############################################################################
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* checking for file ‘ChAMP/DESCRIPTION’ ... OK
* preparing ‘ChAMP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChAMP.Rmd’ using rmarkdown
pandoc-citeproc: PandocHttpError "http://www.zotero.org/styles/american-medical-association" (HttpExceptionRequest Request {
  host                 = "www.zotero.org"
  port                 = 80
  secure               = False
  requestHeaders       = []
  path                 = "/styles/american-medical-association"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (ConnectionFailure Network.Socket.getAddrInfo (called with preferred socket type/protocol: AddrInfo {addrFlags = [AI_ADDRCONFIG], addrFamily = AF_UNSPEC, addrSocketType = Stream, addrProtocol = 0, addrAddress = <assumed to be undefined>, addrCanonName = <assumed to be undefined>}, host name: Just "www.zotero.org", service name: Just "80"): does not exist (Try again)))
Error running filter /usr/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'ChAMP.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘ChAMP.Rmd’

SUMMARY: processing the following file failed:
  ‘ChAMP.Rmd’

Error: Vignette re-building failed.
Execution halted