| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 174/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BindingSiteFinder 2.6.0 (landing page) Mirko Brüggemann
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the BindingSiteFinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BindingSiteFinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: BindingSiteFinder |
| Version: 2.6.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder |
| StartedAt: 2025-10-13 23:03:26 -0000 (Mon, 13 Oct 2025) |
| EndedAt: 2025-10-13 23:06:14 -0000 (Mon, 13 Oct 2025) |
| EllapsedTime: 168.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder
###
##############################################################################
##############################################################################
* checking for file ‘BindingSiteFinder/DESCRIPTION’ ... OK
* preparing ‘BindingSiteFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rmd’ using rmarkdown
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
cannot find optipng; please install and put it in PATH
Quitting from vignette.Rmd:363-365 [unnamed-chunk-28]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `+.gg`:
! 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
---
Backtrace:
▆
1. └─BindingSiteFinder::reproducibilityScatterPlot(bdsOut)
2. └─GGally:::`+.gg`(...)
3. └─GGally:::add_list_to_ggmatrix(e1, e2)
4. └─GGally:::`+.gg`(e1, item)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
--- failed re-building ‘vignette.Rmd’
SUMMARY: processing the following file failed:
‘vignette.Rmd’
Error: Vignette re-building failed.
Execution halted