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This page was generated on 2025-01-21 15:42 -0500 (Tue, 21 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 283/431HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.18.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2025-01-21 07:30 -0500 (Tue, 21 Jan 2025)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_20
git_last_commit: b95d876
git_last_commit_date: 2024-10-29 09:51:11 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published


CHECK results for optimalFlowData on nebbiolo2

To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.18.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings optimalFlowData_1.18.0.tar.gz
StartedAt: 2025-01-21 12:27:39 -0500 (Tue, 21 Jan 2025)
EndedAt: 2025-01-21 12:28:39 -0500 (Tue, 21 Jan 2025)
EllapsedTime: 60.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings optimalFlowData_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 97.4Mb
  sub-directories of 1Mb or more:
    data  97.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 97.2 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.


Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0280.0120.039
Cytometry100.0210.0050.026
Cytometry110.0180.0100.028
Cytometry120.0190.0090.028
Cytometry130.0230.0040.027
Cytometry140.0310.0060.036
Cytometry150.0060.0090.015
Cytometry160.0130.0020.015
Cytometry170.0480.0160.063
Cytometry180.0380.0170.054
Cytometry190.0230.0010.023
Cytometry20.0550.0050.060
Cytometry200.0370.0020.039
Cytometry210.0490.0020.051
Cytometry220.0210.0010.023
Cytometry230.0240.0050.030
Cytometry240.0230.0050.028
Cytometry250.0210.0070.028
Cytometry260.0220.0020.024
Cytometry270.0590.0100.068
Cytometry280.0940.0180.111
Cytometry290.0520.0160.069
Cytometry30.0110.0010.012
Cytometry300.0450.0030.048
Cytometry310.0420.0080.050
Cytometry320.0470.0040.050
Cytometry330.0570.0010.058
Cytometry340.0600.0020.062
Cytometry350.0430.0010.044
Cytometry360.0100.0010.011
Cytometry370.0120.0000.011
Cytometry380.0100.0010.011
Cytometry390.0120.0000.013
Cytometry40.0110.0000.012
Cytometry400.0290.0010.030
Cytometry50.0110.0010.011
Cytometry60.0110.0010.011
Cytometry70.0140.0000.014
Cytometry80.0110.0010.011
Cytometry90.0190.0020.020
buildDatabase0.4650.0370.502
cytometry.diagnosis0.0010.0000.002
noise.types0.0000.0000.001