Back to Build/check report for BioC 3.20 experimental data
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This page was generated on 2024-12-03 15:42 -0500 (Tue, 03 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4739
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 68/431HostnameOS / ArchINSTALLBUILDCHECK
CONFESSdata 1.34.0  (landing page)
Diana LOW
Snapshot Date: 2024-12-03 07:30 -0500 (Tue, 03 Dec 2024)
git_url: https://git.bioconductor.org/packages/CONFESSdata
git_branch: RELEASE_3_20
git_last_commit: ccf731e
git_last_commit_date: 2024-10-29 09:45:07 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for CONFESSdata on nebbiolo2

To the developers/maintainers of the CONFESSdata package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CONFESSdata
Version: 1.34.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:CONFESSdata.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings CONFESSdata_1.34.0.tar.gz
StartedAt: 2024-12-03 12:06:02 -0500 (Tue, 03 Dec 2024)
EndedAt: 2024-12-03 12:09:55 -0500 (Tue, 03 Dec 2024)
EllapsedTime: 233.0 seconds
RetCode: 0
Status:   OK  
CheckDir: CONFESSdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:CONFESSdata.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings CONFESSdata_1.34.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/CONFESSdata.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘CONFESSdata/DESCRIPTION’ ... OK
* this is package ‘CONFESSdata’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CONFESSdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 36.1Mb
  sub-directories of 1Mb or more:
    extdata  36.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/CONFESSdata.Rcheck/00check.log’
for details.


Installation output

CONFESSdata.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL CONFESSdata
###
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘CONFESSdata’ ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CONFESSdata)

Tests output


Example timings

CONFESSdata.Rcheck/CONFESSdata-Ex.timings

nameusersystemelapsed
CONFESSdata0.0050.0070.013