Multiple platform build/check report for BioC 3.20 - BUILD results for rawDiag on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for rawDiag on merida1

To the developers/maintainers of the rawDiag package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rawDiag.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: rawDiag

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rawDiag

StartedAt: 2025-03-31 21:16:01 -0400 (Mon, 31 Mar 2025)

EndedAt: 2025-03-31 21:16:20 -0400 (Mon, 31 Mar 2025)

EllapsedTime: 18.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rawDiag
###
##############################################################################
##############################################################################


* checking for file ‘rawDiag/DESCRIPTION’ ... OK
* preparing ‘rawDiag’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘rawDiag.Rmd’ using rmarkdown

Unhandled Exception:
System.IO.FileNotFoundException: Could not load file or assembly 'ThermoFisher.CommonCore.RawFileReader, Version=5.0.0.93, Culture=neutral, PublicKeyToken=1aef06afb5abd953' or one of its dependencies.
File name: 'ThermoFisher.CommonCore.RawFileReader, Version=5.0.0.93, Culture=neutral, PublicKeyToken=1aef06afb5abd953'
[ERROR] FATAL UNHANDLED EXCEPTION: System.IO.FileNotFoundException: Could not load file or assembly 'ThermoFisher.CommonCore.RawFileReader, Version=5.0.0.93, Culture=neutral, PublicKeyToken=1aef06afb5abd953' or one of its dependencies.
File name: 'ThermoFisher.CommonCore.RawFileReader, Version=5.0.0.93, Culture=neutral, PublicKeyToken=1aef06afb5abd953'

Quitting from rawDiag.Rmd:205-213 [checkInstallRequirements]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (rvs != "No RAW file specified!") ...`:
! argument is of length zero
---
Backtrace:
    ▆
 1. └─rawDiag::checkRawrr()
 2.   ├─base::isFALSE(rawrr:::.isAssemblyWorking())
 3.   └─rawrr:::.isAssemblyWorking()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rawDiag.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘rawDiag.Rmd’

SUMMARY: processing the following file failed:
  ‘rawDiag.Rmd’

Error: Vignette re-building failed.
Execution halted