| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-09 21:31 -0500 (Sat, 09 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4505 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4538 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4486 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1630/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| qpgraph 2.40.0 (landing page) Robert Castelo
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the qpgraph package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qpgraph.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: qpgraph |
| Version: 2.40.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph |
| StartedAt: 2024-11-08 15:24:07 -0500 (Fri, 08 Nov 2024) |
| EndedAt: 2024-11-08 15:24:27 -0500 (Fri, 08 Nov 2024) |
| EllapsedTime: 20.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘qpgraph’ ...
** using staged installation
checking for gcc... clang -arch arm64
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ANSI C... none needed
checking build system type... aarch64-apple-darwin22.6.0
checking host system type... aarch64-apple-darwin22.6.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c cliquer.c -o cliquer.o
cliquer.c:13:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
cliquer.c:13:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
In file included from cliquer.c:29:
In file included from ./cliquer.h:7:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c graph.c -o graph.o
graph.c:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
graph.c:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
In file included from graph.c:28:
In file included from ./graph.h:5:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c qpgraph.c -o qpgraph.o
In file included from qpgraph.c:41:
In file included from ./cliquer.h:7:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
qpgraph.c:5154:10: warning: variable 'avgpr' set but not used [-Wunused-but-set-variable]
double avgpr = 0;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c reorder.c -o reorder.o
reorder.c:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
reorder.c:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
In file included from reorder.c:16:
In file included from ./reorder.h:5:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
* Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
^
4 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-qpgraph/00new/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qpgraph)