Jiri Hon
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/pqsfinder |
| git_branch: RELEASE_3_20 |
| git_last_commit: 7baec2f |
| git_last_commit_date: 2024-10-29 10:10:06 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:08 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1584/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pqsfinder 2.22.0 (landing page) Jiri Hon
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the pqsfinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pqsfinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: pqsfinder |
| Version: 2.22.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder |
| StartedAt: 2024-11-20 03:01:01 -0000 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 03:01:06 -0000 (Wed, 20 Nov 2024) |
| EllapsedTime: 5.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder
###
##############################################################################
##############################################################################
* checking for file ‘pqsfinder/DESCRIPTION’ ... OK
* preparing ‘pqsfinder’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘pqsfinder’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:680,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/requires_hosted.h:31,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:41,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/platform/compiler.h:100,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:66,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:30,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:27,
from RcppExports.cpp:4:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:44:19: error: missing binary operator before token "("
44 | #if __GLIBC_PREREQ(2,15) && defined(_GNU_SOURCE)
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:55:19: error: missing binary operator before token "("
55 | #if __GLIBC_PREREQ(2, 26) \
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:71:20: error: missing binary operator before token "("
71 | # if __GLIBC_PREREQ(2, 27)
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:83:20: error: missing binary operator before token "("
83 | # if __GLIBC_PREREQ(2, 34)
| ^
In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:33,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:47:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/huge_val.h:27:18: error: missing binary operator before token "("
27 | #if __GNUC_PREREQ(3,3)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/huge_val.h:29:20: error: missing binary operator before token "("
29 | #elif __GNUC_PREREQ(2,96)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:396:42: error: missing binary operator before token "("
396 | #if defined __USE_ISOC99 && __GNUC_PREREQ(2,97)
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1152:7: error: missing binary operator before token "("
1152 | && !_GLIBCXX_NO_OBSOLETE_ISINF_ISNAN_DYNAMIC
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1179:7: error: missing binary operator before token "("
1179 | && !_GLIBCXX_NO_OBSOLETE_ISINF_ISNAN_DYNAMIC
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:44,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:40,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:42,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/string:42,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h:25,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:68:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:74:43: error: missing binary operator before token "("
74 | # if defined __cplusplus && __GNUC_PREREQ (4, 4)
| ^
In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:57,
from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:74,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:42,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ext/string_conversions.h:45,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4154,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/string:54:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:42:20: error: missing binary operator before token "("
42 | # if __GNUC_PREREQ (4, 6) && !defined _LIBC
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:55:44: error: missing binary operator before token "("
55 | # if !defined __cplusplus && __GNUC_PREREQ (3, 3)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:60:44: error: missing binary operator before token "("
60 | # if defined __cplusplus && __GNUC_PREREQ (2,8)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:144:19: error: missing binary operator before token "("
144 | #if __GNUC_PREREQ (4,3)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:157:19: error: missing binary operator before token "("
157 | #if __GNUC_PREREQ (2,97)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:219:19: error: missing binary operator before token "("
219 | #if __GNUC_PREREQ (2,96)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:228:19: error: missing binary operator before token "("
228 | #if __GNUC_PREREQ (2,96)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:235:19: error: missing binary operator before token "("
235 | #if __GNUC_PREREQ (2,5)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:244:19: error: missing binary operator before token "("
244 | #if __GNUC_PREREQ (3,1)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:253:19: error: missing binary operator before token "("
253 | #if __GNUC_PREREQ (3,2)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:265:19: error: missing binary operator before token "("
265 | #if __GNUC_PREREQ (2,8)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:275:19: error: missing binary operator before token "("
275 | #if __GNUC_PREREQ (2,97)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:284:19: error: missing binary operator before token "("
284 | #if __GNUC_PREREQ (3,3)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:292:19: error: missing binary operator before token "("
292 | #if __GNUC_PREREQ (3,4)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:306:19: error: missing binary operator before token "("
306 | #if __GNUC_PREREQ (3,2)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:314:19: error: missing binary operator before token "("
314 | #if __GNUC_PREREQ (4,3)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:329:44: error: missing binary operator before token "("
329 | #if (!defined __cplusplus || __GNUC_PREREQ (4,3) \
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:348:19: error: missing binary operator before token "("
348 | #if __GNUC_PREREQ (4,3)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:357:20: error: missing binary operator before token "("
357 | #if !__GNUC_PREREQ (2,8)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:362:20: error: missing binary operator before token "("
362 | #if !__GNUC_PREREQ (2,92)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:369:19: error: missing binary operator before token "("
369 | #if __GNUC_PREREQ (3,1) && !defined __GNUG__
| ^
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:43,
from /home/biocbuild/R/R-4.4.1/include/R_ext/RS.h:30,
from /home/biocbuild/R/R-4.4.1/include/R.h:78,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:70:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:35:42: error: missing binary operator before token "("
35 | #if defined __cplusplus && __GNUC_PREREQ (4, 4)
| ^
In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sched.h:42,
from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:23,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:35,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr.h:157,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ext/atomicity.h:35,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/ios_base.h:39,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/streambuf:43,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/streambuf_iterator.h:35,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/iterator:66,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:51:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:132:20: error: missing binary operator before token "("
132 | # if __GNUC_PREREQ (2, 91)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:170:20: error: missing binary operator before token "("
170 | # if __GNUC_PREREQ (2, 91)
| ^
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cassert:44,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:137,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat.h:40,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:74:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/assert.h:38:42: error: missing binary operator before token "("
38 | #if defined __cplusplus && __GNUC_PREREQ (2,95)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:29:1: error: '__BEGIN_DECLS' does not name a type
29 | __BEGIN_DECLS
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: '__' was not declared in this scope
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: 'acos' was not declared in this scope
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: '__CONCAT' cannot be used as a function
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: expected primary-expression before ')' token
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: expression list treated as compound expression in initializer [-fpermissive]
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: redefinition of 'double __CONCAT'
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: 'asin' was not declared in this scope
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: expected primary-expression before ')' token
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: redefinition of 'double __CONCAT'
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: '__' was not declared in this scope
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: 'asin' was not declared in this scope
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: '__CONCAT' cannot be used as a function
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: expected primary-expression before ')' token
56 | __MATHCALL (asin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: redefinition of 'double __CONCAT'
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: 'atan' was not declared in this scope
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: expected primary-expression before ')' token
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: redefinition of 'double __CONCAT'
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: '__' was not declared in this scope
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: 'atan' was not declared in this scope
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: '__CONCAT' cannot be used as a function
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: expected primary-expression before ')' token
58 | __MATHCALL (atan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: redefinition of 'double __CONCAT'
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: 'atan2' was not declared in this scope
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: expected primary-expression before ')' token
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: redefinition of 'double __CONCAT'
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: '__' was not declared in this scope
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: 'atan2' was not declared in this scope
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: '__CONCAT' cannot be used as a function
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: expected primary-expression before ')' token
60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: redefinition of 'double __CONCAT'
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: 'cos' was not declared in this scope; did you mean 'const'?
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: expected primary-expression before ')' token
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: redefinition of 'double __CONCAT'
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: '__' was not declared in this scope
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: 'cos' was not declared in this scope; did you mean 'const'?
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: '__CONCAT' cannot be used as a function
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: expected primary-expression before ')' token
63 | __MATHCALL (cos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: redefinition of 'double __CONCAT'
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: 'sin' was not declared in this scope
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: expected primary-expression before ')' token
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: redefinition of 'double __CONCAT'
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: '__' was not declared in this scope
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: 'sin' was not declared in this scope
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: '__CONCAT' cannot be used as a function
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: expected primary-expression before ')' token
65 | __MATHCALL (sin,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: redefinition of 'double __CONCAT'
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: 'tan' was not declared in this scope
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: expected primary-expression before ')' token
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: redefinition of 'double __CONCAT'
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: '__' was not declared in this scope
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: 'tan' was not declared in this scope
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: '__CONCAT' cannot be used as a function
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: expected primary-expression before ')' token
67 | __MATHCALL (tan,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: redefinition of 'double __CONCAT'
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: 'cosh' was not declared in this scope
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: expected primary-expression before ')' token
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: redefinition of 'double __CONCAT'
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: '__' was not declared in this scope
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: 'cosh' was not declared in this scope
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: '__CONCAT' cannot be used as a function
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: expected primary-expression before ')' token
72 | __MATHCALL (cosh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: redefinition of 'double __CONCAT'
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: 'sinh' was not declared in this scope
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: expected primary-expression before ')' token
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: redefinition of 'double __CONCAT'
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: '__' was not declared in this scope
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: 'sinh' was not declared in this scope
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: '__CONCAT' cannot be used as a function
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: expected primary-expression before ')' token
74 | __MATHCALL (sinh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: redefinition of 'double __CONCAT'
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: 'tanh' was not declared in this scope
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: expected primary-expression before ')' token
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: redefinition of 'double __CONCAT'
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: '__' was not declared in this scope
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: 'tanh' was not declared in this scope
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: '__CONCAT' cannot be used as a function
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: expected primary-expression before ')' token
76 | __MATHCALL (tanh,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:77:1: error: '__END_NAMESPACE_STD' does not name a type
77 | _Mdouble_END_NAMESPACE
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: redefinition of 'double __CONCAT'
100 | __MATHCALL (exp,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: '__' was not declared in this scope
100 | __MATHCALL (exp,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: 'exp' was not declared in this scope
100 | __MATHCALL (exp,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: '__CONCAT' cannot be used as a function
100 | __MATHCALL (exp,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: expected primary-expression before ')' token
100 | __MATHCALL (exp,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: redefinition of 'double __CONCAT'
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: 'frexp' was not declared in this scope
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: expected primary-expression before ')' token
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: redefinition of 'double __CONCAT'
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: '__' was not declared in this scope
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: 'frexp' was not declared in this scope
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: '__CONCAT' cannot be used as a function
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: expected primary-expression before ')' token
103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: redefinition of 'double __CONCAT'
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: 'ldexp' was not declared in this scope
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: expected primary-expression before ')' token
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: redefinition of 'double __CONCAT'
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: '__' was not declared in this scope
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: 'ldexp' was not declared in this scope
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: '__CONCAT' cannot be used as a function
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: expected primary-expression before ')' token
106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: redefinition of 'double __CONCAT'
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: 'log' was not declared in this scope; did you mean 'long'?
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: expected primary-expression before ')' token
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: redefinition of 'double __CONCAT'
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: '__' was not declared in this scope
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: 'log' was not declared in this scope; did you mean 'long'?
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: '__CONCAT' cannot be used as a function
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: expected primary-expression before ')' token
109 | __MATHCALL (log,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: redefinition of 'double __CONCAT'
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: 'log10' was not declared in this scope
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: expected primary-expression before ')' token
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: redefinition of 'double __CONCAT'
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: '__' was not declared in this scope
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: 'log10' was not declared in this scope
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: '__CONCAT' cannot be used as a function
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: expected primary-expression before ')' token
112 | __MATHCALL (log10,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: redefinition of 'double __CONCAT'
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: 'modf' was not declared in this scope
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: expected primary-expression before ')' token
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: redefinition of 'double __CONCAT'
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: '__' was not declared in this scope
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: 'modf' was not declared in this scope
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: '__CONCAT' cannot be used as a function
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: expected primary-expression before ')' token
115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr))
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:117:1: error: '__END_NAMESPACE_STD' does not name a type
117 | _Mdouble_END_NAMESPACE
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: redefinition of 'double __CONCAT'
154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: '__' was not declared in this scope
154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: 'pow' was not declared in this scope; did you mean 'pow1p'?
154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: '__CONCAT' cannot be used as a function
154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: expected primary-expression before ')' token
154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: redefinition of 'double __CONCAT'
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: 'sqrt' was not declared in this scope
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: expected primary-expression before ')' token
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: redefinition of 'double __CONCAT'
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: '__' was not declared in this scope
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: 'sqrt' was not declared in this scope
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: '__CONCAT' cannot be used as a function
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: expected primary-expression before ')' token
157 | __MATHCALL (sqrt,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:158:1: error: '__END_NAMESPACE_STD' does not name a type
158 | _Mdouble_END_NAMESPACE
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: redefinition of 'double __CONCAT'
179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: '__' was not declared in this scope
179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: 'ceil' was not declared in this scope
179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: '__CONCAT' cannot be used as a function
179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: expected primary-expression before ')' token
179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: redefinition of 'double __CONCAT'
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: 'fabs' was not declared in this scope
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: expected primary-expression before ')' token
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: redefinition of 'double __CONCAT'
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: '__' was not declared in this scope
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: 'fabs' was not declared in this scope
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: '__CONCAT' cannot be used as a function
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: expected primary-expression before ')' token
182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: redefinition of 'double __CONCAT'
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: 'floor' was not declared in this scope
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: expected primary-expression before ')' token
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: redefinition of 'double __CONCAT'
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: '__' was not declared in this scope
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: 'floor' was not declared in this scope
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: '__CONCAT' cannot be used as a function
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: expected primary-expression before ')' token
185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__));
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: redefinition of 'double __CONCAT'
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: 'fmod' was not declared in this scope
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: expected primary-expression before ')' token
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: redefinition of 'double __CONCAT'
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: '__' was not declared in this scope
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: 'fmod' was not declared in this scope
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: '__CONCAT' cannot be used as a function
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: expected primary-expression before ')' token
188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:193:1: error: conflicting declaration 'int __CONCAT'
193 | __MATHDECL_1 (int,__isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: previous declaration as 'double __CONCAT'
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:193:1: error: '__isinf' was not declared in this scope
193 | __MATHDECL_1 (int,__isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:193:1: error: expected primary-expression before ')' token
193 | __MATHDECL_1 (int,__isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:196:1: error: conflicting declaration 'int __CONCAT'
196 | __MATHDECL_1 (int,__finite,, (_Mdouble_ __value)) __attribute__ ((__const__));
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: previous declaration as 'double __CONCAT'
54 | __MATHCALL (acos,, (_Mdouble_ __x));
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:196:1: error: '__finite' was not declared in this scope
196 | __MATHDECL_1 (int,__finite,, (_Mdouble_ __value)) __attribute__ ((__const__));
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:196:1: error: expected primary-expression before ')' token
196 | __MATHDECL_1 (int,__finite,, (_Mdouble_ __value)) __attribute__ ((__const__));
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:197:1: error: '__END_NAMESPACE_STD' does not name a type
197 | _Mdouble_END_NAMESPACE
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:475:1: error: '__END_DECLS' does not name a type
475 | __END_DECLS
| ^~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/std_abs.h:38,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:49:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:34:1: error: '__BEGIN_DECLS' does not name a type
34 | __BEGIN_DECLS
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:101:5: error: 'div_t' does not name a type
101 | } div_t;
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:112:1: error: '__END_NAMESPACE_STD' does not name a type
112 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:142:1: error: '__BEGIN_NAMESPACE_STD' does not name a type
142 | __BEGIN_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:148:6: error: expected initializer before '__THROW'
148 | __THROW __attribute_pure__ __nonnull ((1)) __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:151:6: error: expected initializer before '__THROW'
151 | __THROW __attribute_pure__ __nonnull ((1)) __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:152:1: error: '__END_NAMESPACE_STD' does not name a type
152 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:167:1: error: '__END_NAMESPACE_STD' does not name a type
167 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:189:6: error: expected initializer before '__THROW'
189 | __THROW __nonnull ((1));
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:190:1: error: '__END_NAMESPACE_STD' does not name a type
190 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:376:41: error: expected initializer before '__THROW'
376 | extern void srand (unsigned int __seed) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:377:1: error: '__END_NAMESPACE_STD' does not name a type
377 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:467:22: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
467 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:467:38: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
467 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:467:51: error: expression list treated as compound expression in initializer [-fpermissive]
467 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:469:1: error: '__END_NAMESPACE_STD' does not name a type
469 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:482:32: error: expected initializer before '__THROW'
482 | extern void free (void *__ptr) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:483:1: error: '__END_NAMESPACE_STD' does not name a type
483 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:518:43: error: expected initializer before '__THROW'
518 | extern int atexit (void (*__func) (void)) __THROW __nonnull ((1));
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:529:1: error: '__END_NAMESPACE_STD' does not name a type
529 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:550:1: error: '__END_NAMESPACE_STD' does not name a type
550 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:564:1: error: '__END_NAMESPACE_STD' does not name a type
564 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:717:1: error: '__END_NAMESPACE_STD' does not name a type
717 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:751:1: error: '__BEGIN_NAMESPACE_STD' does not name a type
751 | __BEGIN_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:760:34: error: 'size_t' has not been declared
760 | extern void qsort (void *__base, size_t __nmemb, size_t __size,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:760:50: error: 'size_t' has not been declared
760 | extern void qsort (void *__base, size_t __nmemb, size_t __size,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:761:20: error: '__compar_fn_t' has not been declared
761 | __compar_fn_t __compar) __nonnull ((1, 4));
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:761:44: error: expected initializer before '__nonnull'
761 | __compar_fn_t __compar) __nonnull ((1, 4));
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:770:26: error: expected initializer before '__THROW'
770 | extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:771:37: error: expected initializer before '__THROW'
771 | extern long int labs (long int __x) __THROW __attribute__ ((__const__)) __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:772:1: error: '__END_NAMESPACE_STD' does not name a type
772 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:787:6: error: expected initializer before '__THROW'
787 | __THROW __attribute__ ((__const__)) __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:788:1: error: '__END_NAMESPACE_STD' does not name a type
788 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:863:48: error: 'size_t' has not been declared
863 | const char *__restrict __s, size_t __n) __THROW __wur;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:863:60: error: expected initializer before '__THROW'
863 | const char *__restrict __s, size_t __n) __THROW __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:866:48: error: expected initializer before '__THROW'
866 | extern int wctomb (char *__s, wchar_t __wchar) __THROW __wur;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:870:8: error: 'size_t' does not name a type
870 | extern size_t mbstowcs (wchar_t *__restrict __pwcs,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:33:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
32 | #include <stddef.h>
+++ |+#include <cstddef>
33 |
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:873:8: error: 'size_t' does not name a type
873 | extern size_t wcstombs (char *__restrict __s,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:873:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:876:1: error: '__END_NAMESPACE_STD' does not name a type
876 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:89:11: error: 'acos' has not been declared in '::'
89 | using ::acos;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:108:11: error: 'asin' has not been declared in '::'
108 | using ::asin;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:127:11: error: 'atan' has not been declared in '::'
127 | using ::atan;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:146:11: error: 'atan2' has not been declared in '::'
146 | using ::atan2;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:158:11: error: 'ceil' has not been declared in '::'
158 | using ::ceil;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:177:11: error: 'cos' has not been declared in '::'
177 | using ::cos;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:196:11: error: 'cosh' has not been declared in '::'
196 | using ::cosh;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:215:11: error: 'exp' has not been declared in '::'
215 | using ::exp;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:234:11: error: 'fabs' has not been declared in '::'
234 | using ::fabs;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:253:11: error: 'floor' has not been declared in '::'
253 | using ::floor;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:272:11: error: 'fmod' has not been declared in '::'
272 | using ::fmod;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:284:11: error: 'frexp' has not been declared in '::'
284 | using ::frexp;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:303:11: error: 'ldexp' has not been declared in '::'
303 | using ::ldexp;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:322:11: error: 'log' has not been declared in '::'
322 | using ::log;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:341:11: error: 'log10' has not been declared in '::'
341 | using ::log10;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:360:11: error: 'modf' has not been declared in '::'
360 | using ::modf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:372:11: error: 'pow' has not been declared in '::'
372 | using ::pow;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:400:11: error: 'sin' has not been declared in '::'
400 | using ::sin;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:419:11: error: 'sinh' has not been declared in '::'
419 | using ::sinh;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:438:11: error: 'sqrt' has not been declared in '::'
438 | using ::sqrt;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:457:11: error: 'tan' has not been declared in '::'
457 | using ::tan;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:476:11: error: 'tanh' has not been declared in '::'
476 | using ::tanh;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr int std::fpclassify(float)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1102:33: error: 'FP_NAN' was not declared in this scope; did you mean 'ML_NAN'?
1102 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~
| ML_NAN
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1102:41: error: 'FP_INFINITE' was not declared in this scope; did you mean 'R_FINITE'?
1102 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~~~~~~
| R_FINITE
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1102:54: error: 'FP_NORMAL' was not declared in this scope
1102 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1103:33: error: 'FP_SUBNORMAL' was not declared in this scope
1103 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1103:47: error: 'FP_ZERO' was not declared in this scope
1103 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1103:62: error: body of 'constexpr' function 'constexpr int std::fpclassify(float)' not a return-statement
1103 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr int std::fpclassify(double)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1107:33: error: 'FP_NAN' was not declared in this scope; did you mean 'ML_NAN'?
1107 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~
| ML_NAN
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1107:41: error: 'FP_INFINITE' was not declared in this scope; did you mean 'R_FINITE'?
1107 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~~~~~~
| R_FINITE
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1107:54: error: 'FP_NORMAL' was not declared in this scope
1107 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1108:33: error: 'FP_SUBNORMAL' was not declared in this scope
1108 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1108:47: error: 'FP_ZERO' was not declared in this scope
1108 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1108:62: error: body of 'constexpr' function 'constexpr int std::fpclassify(double)' not a return-statement
1108 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr int std::fpclassify(long double)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1112:33: error: 'FP_NAN' was not declared in this scope; did you mean 'ML_NAN'?
1112 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~
| ML_NAN
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1112:41: error: 'FP_INFINITE' was not declared in this scope; did you mean 'R_FINITE'?
1112 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~~~~~~
| R_FINITE
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1112:54: error: 'FP_NORMAL' was not declared in this scope
1112 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL,
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1113:33: error: 'FP_SUBNORMAL' was not declared in this scope
1113 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1113:47: error: 'FP_ZERO' was not declared in this scope
1113 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1113:62: error: body of 'constexpr' function 'constexpr int std::fpclassify(long double)' not a return-statement
1113 | FP_SUBNORMAL, FP_ZERO, __x); }
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr typename __gnu_cxx::__enable_if<std::__is_integer<_Tp>::__value, int>::__type std::fpclassify(_Tp)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1121:25: error: 'FP_NORMAL' was not declared in this scope
1121 | { return __x != 0 ? FP_NORMAL : FP_ZERO; }
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1121:37: error: 'FP_ZERO' was not declared in this scope
1121 | { return __x != 0 ? FP_NORMAL : FP_ZERO; }
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1820:11: error: 'acosf' has not been declared in '::'
1820 | using ::acosf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1823:11: error: 'acosl' has not been declared in '::'
1823 | using ::acosl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1827:11: error: 'asinf' has not been declared in '::'
1827 | using ::asinf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1830:11: error: 'asinl' has not been declared in '::'
1830 | using ::asinl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1834:11: error: 'atanf' has not been declared in '::'
1834 | using ::atanf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1837:11: error: 'atanl' has not been declared in '::'
1837 | using ::atanl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1841:11: error: 'atan2f' has not been declared in '::'
1841 | using ::atan2f;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1844:11: error: 'atan2l' has not been declared in '::'
1844 | using ::atan2l;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1848:11: error: 'ceilf' has not been declared in '::'
1848 | using ::ceilf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1851:11: error: 'ceill' has not been declared in '::'
1851 | using ::ceill;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1855:11: error: 'cosf' has not been declared in '::'
1855 | using ::cosf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1858:11: error: 'cosl' has not been declared in '::'
1858 | using ::cosl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1862:11: error: 'coshf' has not been declared in '::'
1862 | using ::coshf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1865:11: error: 'coshl' has not been declared in '::'
1865 | using ::coshl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1869:11: error: 'expf' has not been declared in '::'
1869 | using ::expf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1872:11: error: 'expl' has not been declared in '::'
1872 | using ::expl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1876:11: error: 'fabsf' has not been declared in '::'
1876 | using ::fabsf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1879:11: error: 'fabsl' has not been declared in '::'
1879 | using ::fabsl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1883:11: error: 'floorf' has not been declared in '::'
1883 | using ::floorf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1886:11: error: 'floorl' has not been declared in '::'
1886 | using ::floorl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1890:11: error: 'fmodf' has not been declared in '::'
1890 | using ::fmodf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1893:11: error: 'fmodl' has not been declared in '::'
1893 | using ::fmodl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1897:11: error: 'frexpf' has not been declared in '::'
1897 | using ::frexpf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1900:11: error: 'frexpl' has not been declared in '::'
1900 | using ::frexpl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1904:11: error: 'ldexpf' has not been declared in '::'
1904 | using ::ldexpf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1907:11: error: 'ldexpl' has not been declared in '::'
1907 | using ::ldexpl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1911:11: error: 'logf' has not been declared in '::'
1911 | using ::logf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1914:11: error: 'logl' has not been declared in '::'
1914 | using ::logl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1918:11: error: 'log10f' has not been declared in '::'
1918 | using ::log10f;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1921:11: error: 'log10l' has not been declared in '::'
1921 | using ::log10l;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1925:11: error: 'modff' has not been declared in '::'
1925 | using ::modff;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1928:11: error: 'modfl' has not been declared in '::'
1928 | using ::modfl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1932:11: error: 'powf' has not been declared in '::'
1932 | using ::powf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1935:11: error: 'powl' has not been declared in '::'
1935 | using ::powl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1939:11: error: 'sinf' has not been declared in '::'
1939 | using ::sinf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1942:11: error: 'sinl' has not been declared in '::'
1942 | using ::sinl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1946:11: error: 'sinhf' has not been declared in '::'
1946 | using ::sinhf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1949:11: error: 'sinhl' has not been declared in '::'
1949 | using ::sinhl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1953:11: error: 'sqrtf' has not been declared in '::'
1953 | using ::sqrtf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1956:11: error: 'sqrtl' has not been declared in '::'
1956 | using ::sqrtl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1960:11: error: 'tanf' has not been declared in '::'
1960 | using ::tanf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1963:11: error: 'tanl' has not been declared in '::'
1963 | using ::tanl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1967:11: error: 'tanhf' has not been declared in '::'
1967 | using ::tanhf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1970:11: error: 'tanhl' has not been declared in '::'
1970 | using ::tanhl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2085:11: error: 'double_t' has not been declared in '::'
2085 | using ::double_t;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2086:11: error: 'float_t' has not been declared in '::'
2086 | using ::float_t;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2090:11: error: 'acosh' has not been declared in '::'
2090 | using ::acosh;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2091:11: error: 'acoshf' has not been declared in '::'
2091 | using ::acoshf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2092:11: error: 'acoshl' has not been declared in '::'
2092 | using ::acoshl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2094:11: error: 'asinh' has not been declared in '::'
2094 | using ::asinh;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2095:11: error: 'asinhf' has not been declared in '::'
2095 | using ::asinhf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2096:11: error: 'asinhl' has not been declared in '::'
2096 | using ::asinhl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2098:11: error: 'atanh' has not been declared in '::'
2098 | using ::atanh;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2099:11: error: 'atanhf' has not been declared in '::'
2099 | using ::atanhf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2100:11: error: 'atanhl' has not been declared in '::'
2100 | using ::atanhl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2102:11: error: 'cbrt' has not been declared in '::'
2102 | using ::cbrt;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2103:11: error: 'cbrtf' has not been declared in '::'
2103 | using ::cbrtf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2104:11: error: 'cbrtl' has not been declared in '::'
2104 | using ::cbrtl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2106:11: error: 'copysign' has not been declared in '::'
2106 | using ::copysign;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2107:11: error: 'copysignf' has not been declared in '::'
2107 | using ::copysignf;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2108:11: error: 'copysignl' has not been declared in '::'
2108 | using ::copysignl;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2110:11: error: 'erf' has not been declared in '::'
2110 | using ::erf;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2111:11: error: 'erff' has not been declared in '::'
2111 | using ::erff;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2112:11: error: 'erfl' has not been declared in '::'
2112 | using ::erfl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2114:11: error: 'erfc' has not been declared in '::'
2114 | using ::erfc;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2115:11: error: 'erfcf' has not been declared in '::'
2115 | using ::erfcf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2116:11: error: 'erfcl' has not been declared in '::'
2116 | using ::erfcl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2118:11: error: 'exp2' has not been declared in '::'
2118 | using ::exp2;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2119:11: error: 'exp2f' has not been declared in '::'
2119 | using ::exp2f;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2120:11: error: 'exp2l' has not been declared in '::'
2120 | using ::exp2l;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2122:11: error: 'expm1' has not been declared in '::'
2122 | using ::expm1;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2123:11: error: 'expm1f' has not been declared in '::'
2123 | using ::expm1f;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2124:11: error: 'expm1l' has not been declared in '::'
2124 | using ::expm1l;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2126:11: error: 'fdim' has not been declared in '::'
2126 | using ::fdim;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2127:11: error: 'fdimf' has not been declared in '::'
2127 | using ::fdimf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2128:11: error: 'fdiml' has not been declared in '::'
2128 | using ::fdiml;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2130:11: error: 'fma' has not been declared in '::'
2130 | using ::fma;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2131:11: error: 'fmaf' has not been declared in '::'
2131 | using ::fmaf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2132:11: error: 'fmal' has not been declared in '::'
2132 | using ::fmal;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2134:11: error: 'fmax' has not been declared in '::'
2134 | using ::fmax;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2135:11: error: 'fmaxf' has not been declared in '::'
2135 | using ::fmaxf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2136:11: error: 'fmaxl' has not been declared in '::'
2136 | using ::fmaxl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2138:11: error: 'fmin' has not been declared in '::'
2138 | using ::fmin;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2139:11: error: 'fminf' has not been declared in '::'
2139 | using ::fminf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2140:11: error: 'fminl' has not been declared in '::'
2140 | using ::fminl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2142:11: error: 'hypot' has not been declared in '::'
2142 | using ::hypot;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2143:11: error: 'hypotf' has not been declared in '::'
2143 | using ::hypotf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2144:11: error: 'hypotl' has not been declared in '::'
2144 | using ::hypotl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2146:11: error: 'ilogb' has not been declared in '::'
2146 | using ::ilogb;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2147:11: error: 'ilogbf' has not been declared in '::'
2147 | using ::ilogbf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2148:11: error: 'ilogbl' has not been declared in '::'
2148 | using ::ilogbl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2150:11: error: 'lgamma' has not been declared in '::'
2150 | using ::lgamma;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2151:11: error: 'lgammaf' has not been declared in '::'
2151 | using ::lgammaf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2152:11: error: 'lgammal' has not been declared in '::'
2152 | using ::lgammal;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2155:11: error: 'llrint' has not been declared in '::'
2155 | using ::llrint;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2156:11: error: 'llrintf' has not been declared in '::'
2156 | using ::llrintf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2157:11: error: 'llrintl' has not been declared in '::'
2157 | using ::llrintl;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2159:11: error: 'llround' has not been declared in '::'
2159 | using ::llround;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2160:11: error: 'llroundf' has not been declared in '::'
2160 | using ::llroundf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2161:11: error: 'llroundl' has not been declared in '::'
2161 | using ::llroundl;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2164:11: error: 'log1p' has not been declared in '::'
2164 | using ::log1p;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2165:11: error: 'log1pf' has not been declared in '::'
2165 | using ::log1pf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2166:11: error: 'log1pl' has not been declared in '::'
2166 | using ::log1pl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2168:11: error: 'log2' has not been declared in '::'
2168 | using ::log2;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2169:11: error: 'log2f' has not been declared in '::'
2169 | using ::log2f;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2170:11: error: 'log2l' has not been declared in '::'
2170 | using ::log2l;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2172:11: error: 'logb' has not been declared in '::'
2172 | using ::logb;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2173:11: error: 'logbf' has not been declared in '::'
2173 | using ::logbf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2174:11: error: 'logbl' has not been declared in '::'
2174 | using ::logbl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2176:11: error: 'lrint' has not been declared in '::'
2176 | using ::lrint;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2177:11: error: 'lrintf' has not been declared in '::'
2177 | using ::lrintf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2178:11: error: 'lrintl' has not been declared in '::'
2178 | using ::lrintl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2180:11: error: 'lround' has not been declared in '::'
2180 | using ::lround;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2181:11: error: 'lroundf' has not been declared in '::'
2181 | using ::lroundf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2182:11: error: 'lroundl' has not been declared in '::'
2182 | using ::lroundl;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2184:11: error: 'nan' has not been declared in '::'
2184 | using ::nan;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2185:11: error: 'nanf' has not been declared in '::'
2185 | using ::nanf;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2186:11: error: 'nanl' has not been declared in '::'
2186 | using ::nanl;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2188:11: error: 'nearbyint' has not been declared in '::'
2188 | using ::nearbyint;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2189:11: error: 'nearbyintf' has not been declared in '::'
2189 | using ::nearbyintf;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2190:11: error: 'nearbyintl' has not been declared in '::'
2190 | using ::nearbyintl;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2192:11: error: 'nextafter' has not been declared in '::'
2192 | using ::nextafter;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2193:11: error: 'nextafterf' has not been declared in '::'
2193 | using ::nextafterf;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2194:11: error: 'nextafterl' has not been declared in '::'
2194 | using ::nextafterl;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2196:11: error: 'nexttoward' has not been declared in '::'
2196 | using ::nexttoward;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2197:11: error: 'nexttowardf' has not been declared in '::'
2197 | using ::nexttowardf;
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2198:11: error: 'nexttowardl' has not been declared in '::'
2198 | using ::nexttowardl;
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2200:11: error: 'remainder' has not been declared in '::'
2200 | using ::remainder;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2201:11: error: 'remainderf' has not been declared in '::'
2201 | using ::remainderf;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2202:11: error: 'remainderl' has not been declared in '::'
2202 | using ::remainderl;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2204:11: error: 'remquo' has not been declared in '::'
2204 | using ::remquo;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2205:11: error: 'remquof' has not been declared in '::'
2205 | using ::remquof;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2206:11: error: 'remquol' has not been declared in '::'
2206 | using ::remquol;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2208:11: error: 'rint' has not been declared in '::'
2208 | using ::rint;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2209:11: error: 'rintf' has not been declared in '::'
2209 | using ::rintf;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2210:11: error: 'rintl' has not been declared in '::'
2210 | using ::rintl;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2212:11: error: 'round' has not been declared in '::'
2212 | using ::round;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2213:11: error: 'roundf' has not been declared in '::'
2213 | using ::roundf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2214:11: error: 'roundl' has not been declared in '::'
2214 | using ::roundl;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2216:11: error: 'scalbln' has not been declared in '::'
2216 | using ::scalbln;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2217:11: error: 'scalblnf' has not been declared in '::'
2217 | using ::scalblnf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2218:11: error: 'scalblnl' has not been declared in '::'
2218 | using ::scalblnl;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2220:11: error: 'scalbn' has not been declared in '::'
2220 | using ::scalbn;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2221:11: error: 'scalbnf' has not been declared in '::'
2221 | using ::scalbnf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2222:11: error: 'scalbnl' has not been declared in '::'
2222 | using ::scalbnl;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2224:11: error: 'tgamma' has not been declared in '::'
2224 | using ::tgamma;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2225:11: error: 'tgammaf' has not been declared in '::'
2225 | using ::tgammaf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2226:11: error: 'tgammal' has not been declared in '::'
2226 | using ::tgammal;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2228:11: error: 'trunc' has not been declared in '::'
2228 | using ::trunc;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2229:11: error: 'truncf' has not been declared in '::'
2229 | using ::truncf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2230:11: error: 'truncl' has not been declared in '::'
2230 | using ::truncl;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:104:1: error: '__BEGIN_NAMESPACE_C99' does not name a type
104 | __BEGIN_NAMESPACE_C99
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:107:1: error: '__END_NAMESPACE_C99' does not name a type
107 | __END_NAMESPACE_C99
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:138:1: error: '__END_NAMESPACE_STD' does not name a type
138 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:151:59: error: 'size_t' has not been declared
151 | const wchar_t *__restrict __src, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:152:6: error: expected initializer before '__THROW'
152 | __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:156:58: error: expected initializer before '__THROW'
156 | const wchar_t *__restrict __src) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:159:59: error: 'size_t' has not been declared
159 | const wchar_t *__restrict __src, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:160:6: error: expected initializer before '__THROW'
160 | __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:164:6: error: expected initializer before '__THROW'
164 | __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:166:63: error: 'size_t' has not been declared
166 | extern int wcsncmp (const wchar_t *__s1, const wchar_t *__s2, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:167:6: error: expected initializer before '__THROW'
167 | __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:168:1: error: '__END_NAMESPACE_STD' does not name a type
168 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:196:8: error: 'size_t' does not name a type
196 | extern size_t wcsxfrm (wchar_t *__restrict __s1,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:52:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
51 | # include <stddef.h>
+++ |+#include <cstddef>
52 |
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:198:1: error: '__END_NAMESPACE_STD' does not name a type
198 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:238:6: error: expected initializer before '__THROW'
238 | __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:240:1: error: '__END_NAMESPACE_STD' does not name a type
240 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:256:8: error: 'size_t' does not name a type
256 | extern size_t wcsspn (const wchar_t *__wcs, const wchar_t *__accept)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:256:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:267:6: error: expected initializer before '__THROW'
267 | __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:278:6: error: expected initializer before '__THROW'
278 | __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:284:53: error: expected initializer before '__THROW'
284 | wchar_t **__restrict __ptr) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:287:8: error: 'size_t' does not name a type
287 | extern size_t wcslen (const wchar_t *__s) __THROW __attribute_pure__;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:287:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:288:1: error: '__END_NAMESPACE_STD' does not name a type
288 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:325:63: error: 'size_t' has not been declared
325 | extern int wmemcmp (const wchar_t *__s1, const wchar_t *__s2, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:326:6: error: expected initializer before '__THROW'
326 | __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:330:58: error: 'size_t' has not been declared
330 | const wchar_t *__restrict __s2, size_t __n) __THROW;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:330:70: error: expected initializer before '__THROW'
330 | const wchar_t *__restrict __s2, size_t __n) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:334:63: error: 'size_t' has not been declared
334 | extern wchar_t *wmemmove (wchar_t *__s1, const wchar_t *__s2, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:335:6: error: expected initializer before '__THROW'
335 | __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:338:53: error: 'size_t' has not been declared
338 | extern wchar_t *wmemset (wchar_t *__s, wchar_t __c, size_t __n) __THROW;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:338:65: error: expected initializer before '__THROW'
338 | extern wchar_t *wmemset (wchar_t *__s, wchar_t __c, size_t __n) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:339:1: error: '__END_NAMESPACE_STD' does not name a type
339 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:357:31: error: expected initializer before '__THROW'
357 | extern int wctob (wint_t __c) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:361:27: error: 'mbstate_t' does not name a type
361 | extern int mbsinit (const mbstate_t *__ps) __THROW __attribute_pure__;
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:361:44: error: expected initializer before '__THROW'
361 | extern int mbsinit (const mbstate_t *__ps) __THROW __attribute_pure__;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:365:8: error: 'size_t' does not name a type
365 | extern size_t mbrtowc (wchar_t *__restrict __pwc,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:365:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:370:8: error: 'size_t' does not name a type
370 | extern size_t wcrtomb (char *__restrict __s, wchar_t __wc,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:370:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:374:8: error: 'size_t' does not name a type
374 | extern size_t __mbrlen (const char *__restrict __s, size_t __n,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:374:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:376:8: error: 'size_t' does not name a type
376 | extern size_t mbrlen (const char *__restrict __s, size_t __n,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:376:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:378:1: error: '__END_NAMESPACE_STD' does not name a type
378 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:414:8: error: 'size_t' does not name a type
414 | extern size_t wcsrtombs (char *__restrict __dst,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:414:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:417:1: error: '__END_NAMESPACE_STD' does not name a type
417 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:452:1: error: '__END_NAMESPACE_STD' does not name a type
452 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:475:6: error: expected initializer before '__THROW'
475 | __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:476:1: error: '__END_NAMESPACE_STD' does not name a type
476 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:790:1: error: '__END_NAMESPACE_STD' does not name a type
790 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:858:1: error: '__END_NAMESPACE_C99' does not name a type
858 | __END_NAMESPACE_C99
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:143:11: error: 'btowc' has not been declared in '::'
143 | using ::btowc;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:144:11: error: 'fgetwc' has not been declared in '::'
144 | using ::fgetwc;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:148:11: error: 'fwide' has not been declared in '::'
148 | using ::fwide;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:149:11: error: 'fwprintf' has not been declared in '::'
149 | using ::fwprintf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:150:11: error: 'fwscanf' has not been declared in '::'
150 | using ::fwscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:153:11: error: 'mbrlen' has not been declared in '::'
153 | using ::mbrlen;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:154:11: error: 'mbrtowc' has not been declared in '::'
154 | using ::mbrtowc;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:155:11: error: 'mbsinit' has not been declared in '::'
155 | using ::mbsinit;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:156:11: error: 'mbsrtowcs' has not been declared in '::'
156 | using ::mbsrtowcs;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:160:11: error: 'swprintf' has not been declared in '::'
160 | using ::swprintf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:162:11: error: 'swscanf' has not been declared in '::'
162 | using ::swscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:164:11: error: 'vfwprintf' has not been declared in '::'
164 | using ::vfwprintf;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:166:11: error: 'vfwscanf' has not been declared in '::'
166 | using ::vfwscanf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:169:11: error: 'vswprintf' has not been declared in '::'
169 | using ::vswprintf;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:172:11: error: 'vswscanf' has not been declared in '::'
172 | using ::vswscanf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:174:11: error: 'vwprintf' has not been declared in '::'
174 | using ::vwprintf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:176:11: error: 'vwscanf' has not been declared in '::'
176 | using ::vwscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:178:11: error: 'wcrtomb' has not been declared in '::'
178 | using ::wcrtomb;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:179:11: error: 'wcscat' has not been declared in '::'
179 | using ::wcscat;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:180:11: error: 'wcscmp' has not been declared in '::'
180 | using ::wcscmp;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:181:11: error: 'wcscoll' has not been declared in '::'
181 | using ::wcscoll;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:182:11: error: 'wcscpy' has not been declared in '::'
182 | using ::wcscpy;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:183:11: error: 'wcscspn' has not been declared in '::'
183 | using ::wcscspn;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:184:11: error: 'wcsftime' has not been declared in '::'
184 | using ::wcsftime;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:185:11: error: 'wcslen' has not been declared in '::'
185 | using ::wcslen;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:186:11: error: 'wcsncat' has not been declared in '::'
186 | using ::wcsncat;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:187:11: error: 'wcsncmp' has not been declared in '::'
187 | using ::wcsncmp;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:188:11: error: 'wcsncpy' has not been declared in '::'
188 | using ::wcsncpy;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:189:11: error: 'wcsrtombs' has not been declared in '::'
189 | using ::wcsrtombs;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:190:11: error: 'wcsspn' has not been declared in '::'
190 | using ::wcsspn;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:191:11: error: 'wcstod' has not been declared in '::'
191 | using ::wcstod;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:193:11: error: 'wcstof' has not been declared in '::'
193 | using ::wcstof;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:195:11: error: 'wcstok' has not been declared in '::'
195 | using ::wcstok;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:196:11: error: 'wcstol' has not been declared in '::'
196 | using ::wcstol;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:197:11: error: 'wcstoul' has not been declared in '::'
197 | using ::wcstoul;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:198:11: error: 'wcsxfrm' has not been declared in '::'
198 | using ::wcsxfrm;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:199:11: error: 'wctob' has not been declared in '::'
199 | using ::wctob;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:200:11: error: 'wmemcmp' has not been declared in '::'
200 | using ::wmemcmp;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:201:11: error: 'wmemcpy' has not been declared in '::'
201 | using ::wmemcpy;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:202:11: error: 'wmemmove' has not been declared in '::'
202 | using ::wmemmove;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:203:11: error: 'wmemset' has not been declared in '::'
203 | using ::wmemset;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:204:11: error: 'wprintf' has not been declared in '::'
204 | using ::wprintf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:205:11: error: 'wscanf' has not been declared in '::'
205 | using ::wscanf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:206:11: error: 'wcschr' has not been declared in '::'
206 | using ::wcschr;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:207:11: error: 'wcspbrk' has not been declared in '::'
207 | using ::wcspbrk;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:208:11: error: 'wcsrchr' has not been declared in '::'
208 | using ::wcsrchr;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:209:11: error: 'wcsstr' has not been declared in '::'
209 | using ::wcsstr;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:210:11: error: 'wmemchr' has not been declared in '::'
210 | using ::wmemchr;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcschr(wchar_t*, wchar_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:215:19: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive]
215 | { return wcschr(const_cast<const wchar_t*>(__p), __c); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| const wchar_t*
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:214:19: note: initializing argument 1 of 'wchar_t* std::wcschr(wchar_t*, wchar_t)'
214 | wcschr(wchar_t* __p, wchar_t __c)
| ~~~~~~~~~^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcspbrk(wchar_t*, const wchar_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:219:20: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive]
219 | { return wcspbrk(const_cast<const wchar_t*>(__s1), __s2); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| const wchar_t*
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:218:20: note: initializing argument 1 of 'wchar_t* std::wcspbrk(wchar_t*, const wchar_t*)'
218 | wcspbrk(wchar_t* __s1, const wchar_t* __s2)
| ~~~~~~~~~^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcsrchr(wchar_t*, wchar_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:223:20: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive]
223 | { return wcsrchr(const_cast<const wchar_t*>(__p), __c); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| const wchar_t*
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:222:20: note: initializing argument 1 of 'wchar_t* std::wcsrchr(wchar_t*, wchar_t)'
222 | wcsrchr(wchar_t* __p, wchar_t __c)
| ~~~~~~~~~^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcsstr(wchar_t*, const wchar_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:227:19: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive]
227 | { return wcsstr(const_cast<const wchar_t*>(__s1), __s2); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| const wchar_t*
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:226:19: note: initializing argument 1 of 'wchar_t* std::wcsstr(wchar_t*, const wchar_t*)'
226 | wcsstr(wchar_t* __s1, const wchar_t* __s2)
| ~~~~~~~~~^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:231:20: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive]
231 | { return wmemchr(const_cast<const wchar_t*>(__p), __c, __n); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| const wchar_t*
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:230:20: note: initializing argument 1 of 'wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)'
230 | wmemchr(wchar_t* __p, wchar_t __c, size_t __n)
| ~~~~~~~~~^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:251:11: error: 'wcstold' has not been declared in '::'
251 | using ::wcstold;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:260:11: error: 'wcstoll' has not been declared in '::'
260 | using ::wcstoll;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:261:11: error: 'wcstoull' has not been declared in '::'
261 | using ::wcstoull;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:267:22: error: 'wcstold' has not been declared in '__gnu_cxx'
267 | using ::__gnu_cxx::wcstold;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:268:22: error: 'wcstoll' has not been declared in '__gnu_cxx'
268 | using ::__gnu_cxx::wcstoll;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:269:22: error: 'wcstoull' has not been declared in '__gnu_cxx'
269 | using ::__gnu_cxx::wcstoull;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:283:14: error: 'wcstof' has not been declared in 'std'
283 | using std::wcstof;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:286:14: error: 'vfwscanf' has not been declared in 'std'
286 | using std::vfwscanf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:289:14: error: 'vswscanf' has not been declared in 'std'
289 | using std::vswscanf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:292:14: error: 'vwscanf' has not been declared in 'std'
292 | using std::vwscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:296:14: error: 'wcstold' has not been declared in 'std'
296 | using std::wcstold;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:297:14: error: 'wcstoll' has not been declared in 'std'
297 | using std::wcstoll;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:298:14: error: 'wcstoull' has not been declared in 'std'
298 | using std::wcstoull;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:204:16: error: 'mbstate_t' was not declared in this scope
204 | typedef fpos<mbstate_t> streampos;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:204:25: error: template argument 1 is invalid
204 | typedef fpos<mbstate_t> streampos;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:206:16: error: 'mbstate_t' was not declared in this scope
206 | typedef fpos<mbstate_t> wstreampos;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:206:25: error: template argument 1 is invalid
206 | typedef fpos<mbstate_t> wstreampos;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:215:16: error: 'mbstate_t' was not declared in this scope
215 | typedef fpos<mbstate_t> u16streampos;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:215:25: error: template argument 1 is invalid
215 | typedef fpos<mbstate_t> u16streampos;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:217:16: error: 'mbstate_t' was not declared in this scope
217 | typedef fpos<mbstate_t> u32streampos;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:217:25: error: template argument 1 is invalid
217 | typedef fpos<mbstate_t> u32streampos;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:90:20: error: 'mbstate_t' in namespace 'std' does not name a type
90 | typedef std::mbstate_t state_type;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:336:15: error: 'mbstate_t' does not name a type
336 | typedef mbstate_t state_type;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:478:15: error: 'mbstate_t' does not name a type
478 | typedef mbstate_t state_type;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static int std::char_traits<wchar_t>::compare(const char_type*, const char_type*, std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:512:16: error: 'wmemcmp' was not declared in this scope; did you mean 'wmemchr'?
512 | return wmemcmp(__s1, __s2, __n);
| ^~~~~~~
| wmemchr
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::size_t std::char_traits<wchar_t>::length(const char_type*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:522:16: error: 'wcslen' was not declared in this scope
522 | return wcslen(__s);
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static const std::char_traits<wchar_t>::char_type* std::char_traits<wchar_t>::find(const char_type*, std::size_t, const char_type&)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:534:24: error: invalid conversion from 'const std::char_traits<wchar_t>::char_type*' {aka 'const wchar_t*'} to 'wchar_t*' [-fpermissive]
534 | return wmemchr(__s, __a, __n);
| ^~~
| |
| const std::char_traits<wchar_t>::char_type* {aka const wchar_t*}
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:230:20: note: initializing argument 1 of 'wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)'
230 | wmemchr(wchar_t* __p, wchar_t __c, size_t __n)
| ~~~~~~~~~^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::char_traits<wchar_t>::char_type* std::char_traits<wchar_t>::move(char_type*, const char_type*, std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:546:16: error: 'wmemmove' was not declared in this scope
546 | return wmemmove(__s1, __s2, __n);
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::char_traits<wchar_t>::char_type* std::char_traits<wchar_t>::copy(char_type*, const char_type*, std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:558:16: error: 'wmemcpy' was not declared in this scope; did you mean 'Memcpy'?
558 | return wmemcpy(__s1, __s2, __n);
| ^~~~~~~
| Memcpy
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::char_traits<wchar_t>::char_type* std::char_traits<wchar_t>::assign(char_type*, std::size_t, char_type)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:570:16: error: 'wmemset' was not declared in this scope
570 | return wmemset(__s, __a, __n);
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:753:15: error: 'mbstate_t' does not name a type
753 | typedef mbstate_t state_type;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:880:15: error: 'mbstate_t' does not name a type
880 | typedef mbstate_t state_type;
| ^~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/clocale:42,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:41,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:40,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/string:45:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:32:1: error: '__BEGIN_DECLS' does not name a type
32 | __BEGIN_DECLS
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:125:63: error: expected initializer before '__THROW'
125 | extern char *setlocale (int __category, const char *__locale) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:128:40: error: expected initializer before '__THROW'
128 | extern struct lconv *localeconv (void) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:130:1: error: '__END_NAMESPACE_STD' does not name a type
130 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:62:11: error: '__locale_t' does not name a type
62 | typedef __locale_t __c_locale;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:74:26: error: '__c_locale' does not name a type
74 | __convert_from_v(const __c_locale& __cloc __attribute__ ((__unused__)),
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h: In function 'int std::__convert_from_v(const int&, char*, int, const char*, ...)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:82:24: error: 'setlocale' is not a member of 'std'
82 | char* __old = std::setlocale(LC_NUMERIC, 0);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:89:14: error: 'setlocale' is not a member of 'std'
89 | std::setlocale(LC_NUMERIC, "C");
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:109:14: error: 'setlocale' is not a member of 'std'
109 | std::setlocale(LC_NUMERIC, __sav);
| ^~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cctype:42,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:42:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h: At global scope:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:29:1: error: '__BEGIN_DECLS' does not name a type
29 | __BEGIN_DECLS
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:81:6: error: expected initializer before '__THROW'
81 | __THROW __attribute__ ((__const__));
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:83:6: error: expected initializer before '__THROW'
83 | __THROW __attribute__ ((__const__));
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:85:6: error: expected initializer before '__THROW'
85 | __THROW __attribute__ ((__const__));
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:105:1: error: '__BEGIN_NAMESPACE_STD' does not name a type
105 | __BEGIN_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:112:1: error: expected initializer before '__THROW'
112 | __exctype (isalpha);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:113:1: error: expected initializer before '__THROW'
113 | __exctype (iscntrl);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:114:1: error: expected initializer before '__THROW'
114 | __exctype (isdigit);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:115:1: error: expected initializer before '__THROW'
115 | __exctype (islower);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:116:1: error: expected initializer before '__THROW'
116 | __exctype (isgraph);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:117:1: error: expected initializer before '__THROW'
117 | __exctype (isprint);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:118:1: error: expected initializer before '__THROW'
118 | __exctype (ispunct);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:119:1: error: expected initializer before '__THROW'
119 | __exctype (isspace);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:120:1: error: expected initializer before '__THROW'
120 | __exctype (isupper);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:121:1: error: expected initializer before '__THROW'
121 | __exctype (isxdigit);
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:125:30: error: expected initializer before '__THROW'
125 | extern int tolower (int __c) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:128:30: error: expected initializer before '__THROW'
128 | extern int toupper (int __c) __THROW;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:130:1: error: '__END_NAMESPACE_STD' does not name a type
130 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cctype:87:11: error: 'isblank' has not been declared in '::'
87 | using ::isblank;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:139:40: error: 'mbstate_t' was not declared in this scope
139 | template<> class codecvt<char, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:139:49: error: template argument 3 is invalid
139 | template<> class codecvt<char, char, mbstate_t>;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:141:43: error: 'mbstate_t' was not declared in this scope
141 | template<> class codecvt<wchar_t, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:141:52: error: template argument 3 is invalid
141 | template<> class codecvt<wchar_t, char, mbstate_t>;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:144:44: error: 'mbstate_t' was not declared in this scope
144 | template<> class codecvt<char16_t, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:144:53: error: template argument 3 is invalid
144 | template<> class codecvt<char16_t, char, mbstate_t>;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:145:44: error: 'mbstate_t' was not declared in this scope
145 | template<> class codecvt<char32_t, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:145:53: error: template argument 3 is invalid
145 | template<> class codecvt<char32_t, char, mbstate_t>;
| ^
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ext/string_conversions.h:43:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:131:11: error: 'div_t' has not been declared in '::'
131 | using ::div_t;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:134:11: error: 'abort' has not been declared in '::'
134 | using ::abort;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:138:11: error: 'atexit' has not been declared in '::'
138 | using ::atexit;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:141:11: error: 'at_quick_exit' has not been declared in '::'
141 | using ::at_quick_exit;
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:144:11: error: 'atof' has not been declared in '::'
144 | using ::atof;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:145:11: error: 'atoi' has not been declared in '::'
145 | using ::atoi;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:146:11: error: 'atol' has not been declared in '::'
146 | using ::atol;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:147:11: error: 'bsearch' has not been declared in '::'
147 | using ::bsearch;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:149:11: error: 'div' has not been declared in '::'
149 | using ::div;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:150:11: error: 'exit' has not been declared in '::'
150 | using ::exit;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:151:11: error: 'free' has not been declared in '::'
151 | using ::free;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:152:11: error: 'getenv' has not been declared in '::'
152 | using ::getenv;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:153:11: error: 'labs' has not been declared in '::'
153 | using ::labs;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:154:11: error: 'ldiv' has not been declared in '::'
154 | using ::ldiv;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:155:11: error: 'malloc' has not been declared in '::'
155 | using ::malloc;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:157:11: error: 'mblen' has not been declared in '::'
157 | using ::mblen;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:158:11: error: 'mbstowcs' has not been declared in '::'
158 | using ::mbstowcs;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:159:11: error: 'mbtowc' has not been declared in '::'
159 | using ::mbtowc;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:161:11: error: 'qsort' has not been declared in '::'
161 | using ::qsort;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:164:11: error: 'quick_exit' has not been declared in '::'
164 | using ::quick_exit;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:167:11: error: 'rand' has not been declared in '::'
167 | using ::rand;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:168:11: error: 'realloc' has not been declared in '::'
168 | using ::realloc;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:169:11: error: 'srand' has not been declared in '::'
169 | using ::srand;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:170:11: error: 'strtod' has not been declared in '::'
170 | using ::strtod;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:171:11: error: 'strtol' has not been declared in '::'
171 | using ::strtol;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:172:11: error: 'strtoul' has not been declared in '::'
172 | using ::strtoul;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:173:11: error: 'system' has not been declared in '::'
173 | using ::system;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:175:11: error: 'wcstombs' has not been declared in '::'
175 | using ::wcstombs;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:176:11: error: 'wctomb' has not been declared in '::'
176 | using ::wctomb;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib: In function 'ldiv_t std::div(long int, long int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:181:53: error: 'ldiv' was not declared in this scope; did you mean 'div'?
181 | div(long __i, long __j) _GLIBCXX_NOTHROW { return ldiv(__i, __j); }
| ^~~~
| div
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:204:11: error: 'lldiv_t' has not been declared in '::'
204 | using ::lldiv_t;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:210:11: error: '_Exit' has not been declared in '::'
210 | using ::_Exit;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:214:11: error: 'llabs' has not been declared in '::'
214 | using ::llabs;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:216:10: error: 'lldiv_t' does not name a type; did you mean 'ldiv_t'?
216 | inline lldiv_t
| ^~~~~~~
| ldiv_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:220:11: error: 'lldiv' has not been declared in '::'
220 | using ::lldiv;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:231:11: error: 'atoll' has not been declared in '::'
231 | using ::atoll;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:232:11: error: 'strtoll' has not been declared in '::'
232 | using ::strtoll;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:233:11: error: 'strtoull' has not been declared in '::'
233 | using ::strtoull;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:235:11: error: 'strtof' has not been declared in '::'
235 | using ::strtof;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:236:11: error: 'strtold' has not been declared in '::'
236 | using ::strtold;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:244:22: error: 'lldiv_t' has not been declared in '__gnu_cxx'
244 | using ::__gnu_cxx::lldiv_t;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:246:22: error: '_Exit' has not been declared in '__gnu_cxx'
246 | using ::__gnu_cxx::_Exit;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:248:22: error: 'llabs' has not been declared in '__gnu_cxx'
248 | using ::__gnu_cxx::llabs;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:249:22: error: 'div' has not been declared in '__gnu_cxx'
249 | using ::__gnu_cxx::div;
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:250:22: error: 'lldiv' has not been declared in '__gnu_cxx'
250 | using ::__gnu_cxx::lldiv;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:252:22: error: 'atoll' has not been declared in '__gnu_cxx'
252 | using ::__gnu_cxx::atoll;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:253:22: error: 'strtof' has not been declared in '__gnu_cxx'
253 | using ::__gnu_cxx::strtof;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:254:22: error: 'strtoll' has not been declared in '__gnu_cxx'
254 | using ::__gnu_cxx::strtoll;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:255:22: error: 'strtoull' has not been declared in '__gnu_cxx'
255 | using ::__gnu_cxx::strtoull;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:256:22: error: 'strtold' has not been declared in '__gnu_cxx'
256 | using ::__gnu_cxx::strtold;
| ^~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:29:1: error: '__BEGIN_DECLS' does not name a type
29 | __BEGIN_DECLS
| ^~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:46:1: error: '__BEGIN_NAMESPACE_STD' does not name a type
46 | __BEGIN_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:49:1: error: '__END_NAMESPACE_STD' does not name a type
49 | __END_NAMESPACE_STD
| ^~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:32:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/_G_config.h:25:3: error: '_G_fpos_t' does not name a type
25 | } _G_fpos_t;
| ^~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:307:3: error: 'size_t' does not name a type
307 | size_t __pad5;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:58:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
57 | # include <sys/cdefs.h>
+++ |+#include <cstddef>
58 | #endif /*!__P*/
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:311:67: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
311 | char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)];
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:339:62: error: 'size_t' has not been declared
339 | typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes);
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:348:34: error: 'size_t' has not been declared
348 | size_t __n);
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:470:8: error: 'size_t' does not name a type
470 | extern _IO_size_t _IO_sgetn (_IO_FILE *, void *, _IO_size_t);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:470:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:110:9: error: '_G_fpos_t' does not name a type; did you mean '_G_fpos64_t'?
110 | typedef _G_fpos_t fpos_t;
| ^~~~~~~~~
| _G_fpos64_t
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:195:8: error: 'FILE' does not name a type
195 | extern FILE *tmpfile (void) __wur;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:165:1: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
164 | #include <bits/stdio_lim.h>
+++ |+#include <cstdio>
165 |
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:237:20: error: 'FILE' was not declared in this scope
237 | extern int fclose (FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:237:20: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:237:26: error: '__stream' was not declared in this scope
237 | extern int fclose (FILE *__stream);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:242:20: error: 'FILE' was not declared in this scope
242 | extern int fflush (FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:242:20: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:242:26: error: '__stream' was not declared in this scope
242 | extern int fflush (FILE *__stream);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:272:8: error: 'FILE' does not name a type
272 | extern FILE *fopen (const char *__restrict __filename,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:272:8: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:278:8: error: 'FILE' does not name a type
278 | extern FILE *freopen (const char *__restrict __filename,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:278:8: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:13: error: variable or field 'setbuf' declared void
332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:21: error: 'FILE' was not declared in this scope
332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:21: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:27: error: expected primary-expression before '__restrict'
332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW;
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:48: error: expected primary-expression before 'char'
332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:21: error: 'FILE' was not declared in this scope
336 | extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:21: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:27: error: expected primary-expression before '__restrict'
336 | extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf,
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:48: error: expected primary-expression before 'char'
336 | extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:337:21: error: expected primary-expression before 'int'
337 | int __modes, size_t __n) __THROW;
| ^~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:337:34: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
337 | int __modes, size_t __n) __THROW;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:337:44: error: expression list treated as compound expression in initializer [-fpermissive]
337 | int __modes, size_t __n) __THROW;
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:356:21: error: 'FILE' was not declared in this scope
356 | extern int fprintf (FILE *__restrict __stream,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:356:21: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:356:27: error: expected primary-expression before '__restrict'
356 | extern int fprintf (FILE *__restrict __stream,
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:357:21: error: expected primary-expression before 'const'
357 | const char *__restrict __format, ...);
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:357:54: error: expected primary-expression before '...' token
357 | const char *__restrict __format, ...);
| ^~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:357:57: error: expression list treated as compound expression in initializer [-fpermissive]
357 | const char *__restrict __format, ...);
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:22: error: 'FILE' was not declared in this scope
371 | extern int vfprintf (FILE *__restrict __s, const char *__restrict __format,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:22: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:28: error: expected primary-expression before '__restrict'
371 | extern int vfprintf (FILE *__restrict __s, const char *__restrict __format,
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:44: error: expected primary-expression before 'const'
371 | extern int vfprintf (FILE *__restrict __s, const char *__restrict __format,
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:372:33: error: expected primary-expression before '__arg'
372 | _G_va_list __arg);
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:372:38: error: expression list treated as compound expression in initializer [-fpermissive]
372 | _G_va_list __arg);
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:425:20: error: 'FILE' was not declared in this scope
425 | extern int fscanf (FILE *__restrict __stream,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:425:20: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:425:26: error: expected primary-expression before '__restrict'
425 | extern int fscanf (FILE *__restrict __stream,
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:426:20: error: expected primary-expression before 'const'
426 | const char *__restrict __format, ...) __wur;
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:426:53: error: expected primary-expression before '...' token
426 | const char *__restrict __format, ...) __wur;
| ^~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:426:56: error: expression list treated as compound expression in initializer [-fpermissive]
426 | const char *__restrict __format, ...) __wur;
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:531:19: error: 'FILE' was not declared in this scope
531 | extern int fgetc (FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:531:19: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:531:25: error: '__stream' was not declared in this scope
531 | extern int fgetc (FILE *__stream);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:532:18: error: 'FILE' was not declared in this scope
532 | extern int getc (FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:532:18: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:532:24: error: '__stream' was not declared in this scope
532 | extern int getc (FILE *__stream);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:573:28: error: 'FILE' has not been declared
573 | extern int fputc (int __c, FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:574:27: error: 'FILE' has not been declared
574 | extern int putc (int __c, FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:622:52: error: 'FILE' has not been declared
622 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream)
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:689:47: error: 'FILE' has not been declared
689 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:702:29: error: 'FILE' has not been declared
702 | extern int ungetc (int __c, FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:709:8: error: 'size_t' does not name a type
709 | extern size_t fread (void *__restrict __ptr, size_t __size,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:165:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
164 | #include <bits/stdio_lim.h>
+++ |+#include <cstddef>
165 |
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:715:8: error: 'size_t' does not name a type
715 | extern size_t fwrite (const void *__restrict __ptr, size_t __size,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:715:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:19: error: 'FILE' was not declared in this scope
749 | extern int fseek (FILE *__stream, long int __off, int __whence);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:19: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:25: error: '__stream' was not declared in this scope
749 | extern int fseek (FILE *__stream, long int __off, int __whence);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:35: error: expected primary-expression before 'long'
749 | extern int fseek (FILE *__stream, long int __off, int __whence);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:51: error: expected primary-expression before 'int'
749 | extern int fseek (FILE *__stream, long int __off, int __whence);
| ^~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:63: error: expression list treated as compound expression in initializer [-fpermissive]
749 | extern int fseek (FILE *__stream, long int __off, int __whence);
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:754:24: error: 'FILE' was not declared in this scope
754 | extern long int ftell (FILE *__stream) __wur;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:754:24: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:754:30: error: '__stream' was not declared in this scope
754 | extern long int ftell (FILE *__stream) __wur;
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:13: error: variable or field 'rewind' declared void
759 | extern void rewind (FILE *__stream);
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:21: error: 'FILE' was not declared in this scope
759 | extern void rewind (FILE *__stream);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:21: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:27: error: '__stream' was not declared in this scope
759 | extern void rewind (FILE *__stream);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:21: error: 'FILE' was not declared in this scope
798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:21: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:27: error: expected primary-expression before '__restrict'
798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:48: error: 'fpos_t' was not declared in this scope
798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos);
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:48: note: 'fpos_t' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:56: error: expected primary-expression before '__restrict'
798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:72: error: expression list treated as compound expression in initializer [-fpermissive]
798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos);
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:21: error: 'FILE' was not declared in this scope
803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos);
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:21: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:27: error: '__stream' was not declared in this scope
803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos);
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:37: error: expected primary-expression before 'const'
803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos);
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:56: error: expression list treated as compound expression in initializer [-fpermissive]
803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos);
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:13: error: variable or field 'clearerr' declared void
826 | extern void clearerr (FILE *__stream) __THROW;
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:23: error: 'FILE' was not declared in this scope
826 | extern void clearerr (FILE *__stream) __THROW;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:23: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:29: error: '__stream' was not declared in this scope
826 | extern void clearerr (FILE *__stream) __THROW;
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:828:18: error: 'FILE' was not declared in this scope
828 | extern int feof (FILE *__stream) __THROW __wur;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:828:18: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:828:24: error: '__stream' was not declared in this scope
828 | extern int feof (FILE *__stream) __THROW __wur;
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:830:20: error: 'FILE' was not declared in this scope
830 | extern int ferror (FILE *__stream) __THROW __wur;
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:830:20: note: 'FILE' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:830:26: error: '__stream' was not declared in this scope
830 | extern int ferror (FILE *__stream) __THROW __wur;
| ^~~~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:943:1: error: expected declaration before '}' token
943 | __END_DECLS
| ^~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:98:11: error: 'FILE' has not been declared in '::'
98 | using ::FILE;
| ^~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:99:11: error: 'fpos_t' has not been declared in '::'
99 | using ::fpos_t;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:101:11: error: 'clearerr' has not been declared in '::'
101 | using ::clearerr;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:109:11: error: 'fopen' has not been declared in '::'
109 | using ::fopen;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:113:11: error: 'fread' has not been declared in '::'
113 | using ::fread;
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:114:11: error: 'freopen' has not been declared in '::'
114 | using ::freopen;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:119:11: error: 'fwrite' has not been declared in '::'
119 | using ::fwrite;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:133:11: error: 'rewind' has not been declared in '::'
133 | using ::rewind;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:135:11: error: 'setbuf' has not been declared in '::'
135 | using ::setbuf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:139:11: error: 'tmpfile' has not been declared in '::'
139 | using ::tmpfile;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:175:11: error: 'snprintf' has not been declared in '::'
175 | using ::snprintf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:176:11: error: 'vfscanf' has not been declared in '::'
176 | using ::vfscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:177:11: error: 'vscanf' has not been declared in '::'
177 | using ::vscanf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:178:11: error: 'vsnprintf' has not been declared in '::'
178 | using ::vsnprintf;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:179:11: error: 'vsscanf' has not been declared in '::'
179 | using ::vsscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:185:22: error: 'snprintf' has not been declared in '__gnu_cxx'
185 | using ::__gnu_cxx::snprintf;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:186:22: error: 'vfscanf' has not been declared in '__gnu_cxx'
186 | using ::__gnu_cxx::vfscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:187:22: error: 'vscanf' has not been declared in '__gnu_cxx'
187 | using ::__gnu_cxx::vscanf;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:188:22: error: 'vsnprintf' has not been declared in '__gnu_cxx'
188 | using ::__gnu_cxx::vsnprintf;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:189:22: error: 'vsscanf' has not been declared in '__gnu_cxx'
189 | using ::__gnu_cxx::vsscanf;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'int std::__cxx11::stoi(const std::string&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4165:47: error: 'strtol' is not a member of 'std'
4165 | { return __gnu_cxx::__stoa<long, int>(&std::strtol, "stoi", __str.c_str(),
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long int std::__cxx11::stol(const std::string&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4170:36: error: 'strtol' is not a member of 'std'
4170 | { return __gnu_cxx::__stoa(&std::strtol, "stol", __str.c_str(),
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long unsigned int std::__cxx11::stoul(const std::string&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4175:36: error: 'strtoul' is not a member of 'std'
4175 | { return __gnu_cxx::__stoa(&std::strtoul, "stoul", __str.c_str(),
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long int std::__cxx11::stoll(const std::string&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4181:36: error: 'strtoll' is not a member of 'std'
4181 | { return __gnu_cxx::__stoa(&std::strtoll, "stoll", __str.c_str(),
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long unsigned int std::__cxx11::stoull(const std::string&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4186:36: error: 'strtoull' is not a member of 'std'
4186 | { return __gnu_cxx::__stoa(&std::strtoull, "stoull", __str.c_str(),
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'double std::__cxx11::stod(const std::string&, std::size_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4200:36: error: 'strtod' is not a member of 'std'
4200 | { return __gnu_cxx::__stoa(&std::strtod, "stod", __str.c_str(), __idx); }
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'float std::__cxx11::stof(const std::string&, std::size_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4206:36: error: 'strtof' is not a member of 'std'
4206 | { return __gnu_cxx::__stoa(&std::strtof, "stof", __str.c_str(), __idx); }
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long double std::__cxx11::stold(const std::string&, std::size_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4228:36: error: 'strtold' is not a member of 'std'
4228 | { return __gnu_cxx::__stoa(&std::strtold, "stold", __str.c_str(), __idx); }
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'std::string std::__cxx11::to_string(float)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4405:50: error: 'vsnprintf' is not a member of 'std'; did you mean 'vsprintf'?
4405 | return __gnu_cxx::__to_xstring<string>(&std::vsnprintf, __n,
| ^~~~~~~~~
| vsprintf
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'std::string std::__cxx11::to_string(double)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4415:50: error: 'vsnprintf' is not a member of 'std'; did you mean 'vsprintf'?
4415 | return __gnu_cxx::__to_xstring<string>(&std::vsnprintf, __n,
| ^~~~~~~~~
| vsprintf
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'std::string std::__cxx11::to_string(long double)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4425:50: error: 'vsnprintf' is not a member of 'std'; did you mean 'vsprintf'?
4425 | return __gnu_cxx::__to_xstring<string>(&std::vsnprintf, __n,
| ^~~~~~~~~
| vsprintf
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'int std::__cxx11::stoi(const std::wstring&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4433:47: error: 'wcstol' is not a member of 'std'
4433 | { return __gnu_cxx::__stoa<long, int>(&std::wcstol, "stoi", __str.c_str(),
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long int std::__cxx11::stol(const std::wstring&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4438:36: error: 'wcstol' is not a member of 'std'
4438 | { return __gnu_cxx::__stoa(&std::wcstol, "stol", __str.c_str(),
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long unsigned int std::__cxx11::stoul(const std::wstring&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4443:36: error: 'wcstoul' is not a member of 'std'
4443 | { return __gnu_cxx::__stoa(&std::wcstoul, "stoul", __str.c_str(),
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long int std::__cxx11::stoll(const std::wstring&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4448:36: error: 'wcstoll' is not a member of 'std'
4448 | { return __gnu_cxx::__stoa(&std::wcstoll, "stoll", __str.c_str(),
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long unsigned int std::__cxx11::stoull(const std::wstring&, std::size_t*, int)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4453:36: error: 'wcstoull' is not a member of 'std'
4453 | { return __gnu_cxx::__stoa(&std::wcstoull, "stoull", __str.c_str(),
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'float std::__cxx11::stof(const std::wstring&, std::size_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4459:36: error: 'wcstof' is not a member of 'std'
4459 | { return __gnu_cxx::__stoa(&std::wcstof, "stof", __str.c_str(), __idx); }
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'double std::__cxx11::stod(const std::wstring&, std::size_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4463:36: error: 'wcstod' is not a member of 'std'
4463 | { return __gnu_cxx::__stoa(&std::wcstod, "stod", __str.c_str(), __idx); }
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long double std::__cxx11::stold(const std::wstring&, std::size_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4467:36: error: 'wcstold' is not a member of 'std'
4467 | { return __gnu_cxx::__stoa(&std::wcstold, "stold", __str.c_str(), __idx); }
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h: In function 'std::string Rcpp::internal::debug::short_file_name(const char*)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h:34:5: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
34 | size_t index = f.find("/include/");
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h:35:9: error: 'index' was not declared in this scope
35 | if (index != std::string::npos)
| ^~~~~
In file included from /home/biocbuild/R/R-4.4.1/include/R.h:74:
/home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h: At global scope:
/home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:55:21: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
55 | void * R_malloc_gc(size_t);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:56:21: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
56 | void * R_calloc_gc(size_t, size_t);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:56:29: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
56 | void * R_calloc_gc(size_t, size_t);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:56:35: error: expression list treated as compound expression in initializer [-fpermissive]
56 | void * R_calloc_gc(size_t, size_t);
| ^
/home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:57:30: error: 'size_t' has not been declared
57 | void * R_realloc_gc(void *, size_t);
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:43:22: error: 'size_t' has not been declared
43 | size_t __n) __THROW __nonnull ((1, 2));
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:46:56: error: 'size_t' has not been declared
46 | extern void *memmove (void *__dest, const void *__src, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:62:42: error: 'size_t' has not been declared
62 | extern void *memset (void *__s, int __c, size_t __n) __THROW __nonnull ((1));
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:65:56: error: 'size_t' has not been declared
65 | extern int memcmp (const void *__s1, const void *__s2, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:92:48: error: 'size_t' has not been declared
92 | extern void *memchr (const void *__s, int __c, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:129:53: error: 'size_t' has not been declared
129 | const char *__restrict __src, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:137:23: error: 'size_t' has not been declared
137 | size_t __n) __THROW __nonnull ((1, 2));
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:143:57: error: 'size_t' has not been declared
143 | extern int strncmp (const char *__s1, const char *__s2, size_t __n)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:150:8: error: 'size_t' does not name a type
150 | extern size_t strxfrm (char *__restrict __dest,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:33:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
32 | #include <stddef.h>
+++ |+#include <cstddef>
33 |
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:281:8: error: 'size_t' does not name a type
281 | extern size_t strcspn (const char *__s, const char *__reject)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:281:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:285:8: error: 'size_t' does not name a type
285 | extern size_t strspn (const char *__s, const char *__accept)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:285:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:395:8: error: 'size_t' does not name a type
395 | extern size_t strlen (const char *__s)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:395:8: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:447:33: error: 'size_t' has not been declared
447 | extern void __bzero (void *__s, size_t __n) __THROW __nonnull ((1));
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:87:11: error: 'strcspn' has not been declared in '::'
87 | using ::strcspn;
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:89:11: error: 'strlen' has not been declared in '::'
89 | using ::strlen;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:93:11: error: 'strspn' has not been declared in '::'
93 | using ::strspn;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:97:11: error: 'strxfrm' has not been declared in '::'
97 | using ::strxfrm;
| ^~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:71:
/home/biocbuild/R/R-4.4.1/include/Rinternals.h:749:53: error: 'std::FILE' has not been declared
749 | void R_InitFileInPStream(R_inpstream_t stream, std::FILE *fp,
| ^~~~
/home/biocbuild/R/R-4.4.1/include/Rinternals.h:752:55: error: 'std::FILE' has not been declared
752 | void R_InitFileOutPStream(R_outpstream_t stream, std::FILE *fp,
| ^~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:204:30: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
204 | extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:204:48: error: expected primary-expression before 'const'
204 | extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
| ^~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:204:71: error: expression list treated as compound expression in initializer [-fpermissive]
204 | extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp)
| ^
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:206:37: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
206 | extern cpu_set_t *__sched_cpualloc (size_t __count) __THROW __wur;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:24:
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/time.h:205:8: error: 'size_t' does not name a type
205 | extern size_t strftime (char *__restrict __s, size_t __maxsize,
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/time.h:42:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
41 | # include <bits/time.h>
+++ |+#include <cstddef>
42 |
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:308:39: error: 'size_t' has not been declared
308 | size_t *__guardsize)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:313:39: error: 'size_t' has not been declared
313 | size_t __guardsize)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:371:47: error: 'size_t' has not been declared
371 | __attr, size_t *__restrict __stacksize)
| ^~~~~~
/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:378:39: error: 'size_t' has not been declared
378 | size_t __stacksize)
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:125:1: error: 'pthread_mutex_timedlock' was not declared in this scope; did you mean 'pthread_mutex_trylock'?
125 | __gthrw(pthread_mutex_timedlock)
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:125:1: error: 'pthread_mutex_timedlock' was not declared in this scope; did you mean 'pthread_mutex_trylock'?
125 | __gthrw(pthread_mutex_timedlock)
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:141:1: error: 'pthread_mutexattr_settype' was not declared in this scope; did you mean 'pthread_mutexattr_destroy'?
141 | __gthrw(pthread_mutexattr_settype)
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:141:1: error: 'pthread_mutexattr_settype' was not declared in this scope; did you mean 'pthread_mutexattr_destroy'?
141 | __gthrw(pthread_mutexattr_settype)
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h: In function 'int __gthread_mutex_timedlock(__gthread_mutex_t*, const __gthread_time_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:782:46: error: '__gthrw_pthread_mutex_timedlock' cannot be used as a function
782 | return __gthrw_(pthread_mutex_timedlock) (__mutex, __abs_timeout);
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h: In function 'int __gthread_recursive_mutex_init_function(__gthread_recursive_mutex_t*)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:810:52: error: 'PTHREAD_MUTEX_RECURSIVE' was not declared in this scope; did you mean 'PTHREAD_MUTEX_RECURSIVE_NP'?
810 | PTHREAD_MUTEX_RECURSIVE);
| ^~~~~~~~~~~~~~~~~~~~~~~
| PTHREAD_MUTEX_RECURSIVE_NP
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:810:75: error: '__gthrw_pthread_mutexattr_settype' cannot be used as a function
810 | PTHREAD_MUTEX_RECURSIVE);
| ^
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/ios_base.h:41:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:400:12: error: '__c_locale' does not name a type; did you mean 'locale'?
400 | static __c_locale _S_c_locale;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:431:24: error: '__c_locale' has not been declared
431 | _S_create_c_locale(__c_locale& __cloc, const char* __s,
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:432:24: error: '__c_locale' has not been declared
432 | __c_locale __old = 0);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:434:12: error: '__c_locale' does not name a type; did you mean 'locale'?
434 | static __c_locale
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:438:25: error: '__c_locale' has not been declared
438 | _S_destroy_c_locale(__c_locale& __cloc);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:440:12: error: '__c_locale' does not name a type; did you mean 'locale'?
440 | static __c_locale
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:445:12: error: '__c_locale' does not name a type; did you mean 'locale'?
445 | static __c_locale
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:687:7: error: '__c_locale' does not name a type; did you mean 'locale'?
687 | __c_locale _M_c_locale_collate;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:715:25: error: expected ')' before '__cloc'
715 | collate(__c_locale __cloc, size_t __refs = 0)
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h: In constructor 'std::__cxx11::collate<_CharT>::collate(std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:702:24: error: class 'std::__cxx11::collate<_CharT>' does not have any field named '_M_c_locale_collate'
702 | : facet(__refs), _M_c_locale_collate(_S_get_c_locale())
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:702:44: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
702 | : facet(__refs), _M_c_locale_collate(_S_get_c_locale())
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:702:44: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h: In destructor 'virtual std::__cxx11::collate<_CharT>::~collate()':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:779:29: error: '_M_c_locale_collate' was not declared in this scope
779 | { _S_destroy_c_locale(_M_c_locale_collate); }
| ^~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:883:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc: In function 'const _Facet* std::__try_use_facet(const locale&)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:108:7: error: 'mbstate_t' was not declared in this scope
108 | _GLIBCXX_STD_FACET(codecvt<char, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:108:7: error: template argument 3 is invalid
108 | _GLIBCXX_STD_FACET(codecvt<char, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:108:7: error: expected primary-expression before ')' token
108 | _GLIBCXX_STD_FACET(codecvt<char, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:123:7: error: 'mbstate_t' was not declared in this scope
123 | _GLIBCXX_STD_FACET(codecvt<wchar_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:123:7: error: template argument 3 is invalid
123 | _GLIBCXX_STD_FACET(codecvt<wchar_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:123:7: error: expected primary-expression before ')' token
123 | _GLIBCXX_STD_FACET(codecvt<wchar_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:135:7: error: 'mbstate_t' was not declared in this scope
135 | _GLIBCXX_STD_FACET(codecvt<char16_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:135:7: error: template argument 3 is invalid
135 | _GLIBCXX_STD_FACET(codecvt<char16_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:135:7: error: expected primary-expression before ')' token
135 | _GLIBCXX_STD_FACET(codecvt<char16_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:136:7: error: 'mbstate_t' was not declared in this scope
136 | _GLIBCXX_STD_FACET(codecvt<char32_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:136:7: error: template argument 3 is invalid
136 | _GLIBCXX_STD_FACET(codecvt<char32_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:136:7: error: expected primary-expression before ')' token
136 | _GLIBCXX_STD_FACET(codecvt<char32_t, char, mbstate_t>);
| ^~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/exception_ptr.h:36,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/exception:166,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/stdexcept:38,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/system_error:43,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/ios_base.h:46:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/cxxabi_init_exception.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/cxxabi_init_exception.h:63:32: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
63 | __cxa_allocate_exception(size_t) _GLIBCXX_NOTHROW;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/exception_ptr.h: In function 'std::__exception_ptr::exception_ptr std::make_exception_ptr(_Ex)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/exception_ptr.h:253:55: error: '__cxxabiv1::__cxa_allocate_exception' cannot be used as a function
253 | void* __e = __cxxabiv1::__cxa_allocate_exception(sizeof(_Ex));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:39,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_ios.h:37,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ios:46,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ostream:40,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/iostream:41,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:53:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwctype: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwctype:89:11: error: 'iswblank' has not been declared in '::'
89 | using ::iswblank;
| ^~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:41:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:49:35: error: '_ISupper' was not declared in this scope; did you mean '_ISwupper'?
49 | static const mask upper = _ISupper;
| ^~~~~~~~
| _ISwupper
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:50:35: error: '_ISlower' was not declared in this scope; did you mean '_ISwlower'?
50 | static const mask lower = _ISlower;
| ^~~~~~~~
| _ISwlower
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:51:35: error: '_ISalpha' was not declared in this scope; did you mean '_ISwalpha'?
51 | static const mask alpha = _ISalpha;
| ^~~~~~~~
| _ISwalpha
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:52:35: error: '_ISdigit' was not declared in this scope; did you mean '_ISwdigit'?
52 | static const mask digit = _ISdigit;
| ^~~~~~~~
| _ISwdigit
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:53:35: error: '_ISxdigit' was not declared in this scope; did you mean '_ISwxdigit'?
53 | static const mask xdigit = _ISxdigit;
| ^~~~~~~~~
| _ISwxdigit
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:54:35: error: '_ISspace' was not declared in this scope; did you mean '_ISwspace'?
54 | static const mask space = _ISspace;
| ^~~~~~~~
| _ISwspace
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:55:35: error: '_ISprint' was not declared in this scope; did you mean '_ISwprint'?
55 | static const mask print = _ISprint;
| ^~~~~~~~
| _ISwprint
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:56:35: error: '_ISalpha' was not declared in this scope; did you mean '_ISwalpha'?
56 | static const mask graph = _ISalpha | _ISdigit | _ISpunct;
| ^~~~~~~~
| _ISwalpha
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:56:46: error: '_ISdigit' was not declared in this scope; did you mean '_ISwdigit'?
56 | static const mask graph = _ISalpha | _ISdigit | _ISpunct;
| ^~~~~~~~
| _ISwdigit
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:56:57: error: '_ISpunct' was not declared in this scope; did you mean '_ISwpunct'?
56 | static const mask graph = _ISalpha | _ISdigit | _ISpunct;
| ^~~~~~~~
| _ISwpunct
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:57:35: error: '_IScntrl' was not declared in this scope; did you mean '_ISwcntrl'?
57 | static const mask cntrl = _IScntrl;
| ^~~~~~~~
| _ISwcntrl
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:58:35: error: '_ISpunct' was not declared in this scope; did you mean '_ISwpunct'?
58 | static const mask punct = _ISpunct;
| ^~~~~~~~
| _ISwpunct
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:59:35: error: '_ISalpha' was not declared in this scope; did you mean '_ISwalpha'?
59 | static const mask alnum = _ISalpha | _ISdigit;
| ^~~~~~~~
| _ISwalpha
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:59:46: error: '_ISdigit' was not declared in this scope; did you mean '_ISwdigit'?
59 | static const mask alnum = _ISalpha | _ISdigit;
| ^~~~~~~~
| _ISwdigit
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:61:35: error: '_ISblank' was not declared in this scope; did you mean '_ISwblank'?
61 | static const mask blank = _ISblank;
| ^~~~~~~~
| _ISwblank
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:77:26: error: '__c_locale' does not name a type; did you mean 'locale'?
77 | const __c_locale&) throw();
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:83:26: error: '__c_locale' does not name a type; did you mean 'locale'?
83 | const __c_locale&) throw();
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:88:26: error: '__c_locale' does not name a type; did you mean 'locale'?
88 | const __c_locale&) throw();
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:93:26: error: '__c_locale' does not name a type; did you mean 'locale'?
93 | const __c_locale&) throw();
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:698:7: error: '__c_locale' does not name a type; did you mean 'locale'?
698 | __c_locale _M_c_locale_ctype;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:739:23: error: expected ')' before '__cloc'
739 | ctype(__c_locale __cloc, const mask* __table = 0, bool __del = false,
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1203:7: error: '__c_locale' does not name a type; did you mean 'locale'?
1203 | __c_locale _M_c_locale_ctype;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1238:23: error: expected ')' before '__cloc'
1238 | ctype(__c_locale __cloc, size_t __refs = 0);
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1730:26: error: expected ')' before '__cloc'
1730 | numpunct(__c_locale __cloc, size_t __refs = 0)
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1887:30: error: '__c_locale' has not been declared
1887 | _M_initialize_numpunct(__c_locale __cloc = 0);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1898:5: error: variable or field '_M_initialize_numpunct' declared void
1898 | numpunct<char>::_M_initialize_numpunct(__c_locale __cloc);
| ^~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1898:44: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1898 | numpunct<char>::_M_initialize_numpunct(__c_locale __cloc);
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1906:5: error: variable or field '_M_initialize_numpunct' declared void
1906 | numpunct<wchar_t>::_M_initialize_numpunct(__c_locale __cloc);
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1906:47: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1906 | numpunct<wchar_t>::_M_initialize_numpunct(__c_locale __cloc);
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h: In constructor 'std::__cxx11::numpunct_byname<_CharT>::numpunct_byname(const char*, std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1924:13: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1924 | __c_locale __tmp;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1925:38: error: '__tmp' was not declared in this scope
1925 | this->_S_create_c_locale(__tmp, __s);
| ^~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:2687:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function 'virtual _InIter std::num_get<_CharT, _InIter>::do_get(iter_type, iter_type, std::ios_base&, std::ios_base::iostate&, float&) const':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:697:55: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
697 | std::__convert_to_v(__xtrc.c_str(), __v, __err, _S_get_c_locale());
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function 'virtual _InIter std::num_get<_CharT, _InIter>::do_get(iter_type, iter_type, std::ios_base&, std::ios_base::iostate&, double&) const':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:712:55: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
712 | std::__convert_to_v(__xtrc.c_str(), __v, __err, _S_get_c_locale());
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function 'virtual _InIter std::num_get<_CharT, _InIter>::do_get(iter_type, iter_type, std::ios_base&, std::ios_base::iostate&, long double&) const':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:744:55: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
744 | std::__convert_to_v(__xtrc.c_str(), __v, __err, _S_get_c_locale());
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function '_OutIter std::num_put<_CharT, _OutIter>::_M_insert_float(_OutIter, std::ios_base&, _CharT, char, _ValueT) const':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1023:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
1023 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size,
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1026:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
1026 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size,
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1035:45: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
1035 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size,
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1038:45: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
1038 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size,
| ^~~~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:39,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/locale:43,
from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/iomanip:48,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:54:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ctime: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ctime:72:11: error: 'strftime' has not been declared in '::'
72 | using ::strftime;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:183:7: error: '__c_locale' does not name a type; did you mean 'locale'?
183 | __c_locale _M_c_locale_timepunct;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:207:29: error: expected ')' before '__cloc'
207 | __timepunct(__c_locale __cloc, const char* __s, size_t __refs = 0);
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:322:31: error: '__c_locale' has not been declared
322 | _M_initialize_timepunct(__c_locale __cloc = 0);
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:331:5: error: variable or field '_M_initialize_timepunct' declared void
331 | __timepunct<char>::_M_initialize_timepunct(__c_locale __cloc);
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:331:48: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
331 | __timepunct<char>::_M_initialize_timepunct(__c_locale __cloc);
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:340:5: error: variable or field '_M_initialize_timepunct' declared void
340 | __timepunct<wchar_t>::_M_initialize_timepunct(__c_locale __cloc);
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:340:51: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
340 | __timepunct<wchar_t>::_M_initialize_timepunct(__c_locale __cloc);
| ^~~~~~~~~~
| locale
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:352:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: In constructor 'std::__timepunct<_CharT>::__timepunct(std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:43:34: error: class 'std::__timepunct<_CharT>' does not have any field named '_M_c_locale_timepunct'
43 | : facet(__refs), _M_data(0), _M_c_locale_timepunct(0),
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: In constructor 'std::__timepunct<_CharT>::__timepunct(__cache_type*, std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:49:40: error: class 'std::__timepunct<_CharT>' does not have any field named '_M_c_locale_timepunct'
49 | : facet(__refs), _M_data(__cache), _M_c_locale_timepunct(0),
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:54:37: error: expected constructor, destructor, or type conversion before '(' token
54 | __timepunct<_CharT>::__timepunct(__c_locale __cloc, const char* __s,
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: In destructor 'virtual std::__timepunct<_CharT>::~__timepunct()':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:85:27: error: '_M_c_locale_timepunct' was not declared in this scope; did you mean '_M_name_timepunct'?
85 | _S_destroy_c_locale(_M_c_locale_timepunct);
| ^~~~~~~~~~~~~~~~~~~~~
| _M_name_timepunct
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1119:28: error: expected ')' before '__cloc'
1119 | moneypunct(__c_locale __cloc, const char* __s, size_t __refs = 0)
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1408:33: error: '__c_locale' has not been declared
1408 | _M_initialize_moneypunct(__c_locale __cloc = 0,
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1426:5: error: variable or field '_M_initialize_moneypunct' declared void
1426 | moneypunct<char, true>::_M_initialize_moneypunct(__c_locale, const char*);
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1426:54: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1426 | moneypunct<char, true>::_M_initialize_moneypunct(__c_locale, const char*);
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1426:66: error: expected primary-expression before 'const'
1426 | moneypunct<char, true>::_M_initialize_moneypunct(__c_locale, const char*);
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1430:5: error: variable or field '_M_initialize_moneypunct' declared void
1430 | moneypunct<char, false>::_M_initialize_moneypunct(__c_locale, const char*);
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1430:55: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1430 | moneypunct<char, false>::_M_initialize_moneypunct(__c_locale, const char*);
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1430:67: error: expected primary-expression before 'const'
1430 | moneypunct<char, false>::_M_initialize_moneypunct(__c_locale, const char*);
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1441:5: error: variable or field '_M_initialize_moneypunct' declared void
1441 | moneypunct<wchar_t, true>::_M_initialize_moneypunct(__c_locale,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1441:57: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1441 | moneypunct<wchar_t, true>::_M_initialize_moneypunct(__c_locale,
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1442:57: error: expected primary-expression before 'const'
1442 | const char*);
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1446:5: error: variable or field '_M_initialize_moneypunct' declared void
1446 | moneypunct<wchar_t, false>::_M_initialize_moneypunct(__c_locale,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1446:58: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1446 | moneypunct<wchar_t, false>::_M_initialize_moneypunct(__c_locale,
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1447:58: error: expected primary-expression before 'const'
1447 | const char*);
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h: In constructor 'std::__cxx11::moneypunct_byname<_CharT, _Intl>::moneypunct_byname(const char*, std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1467:13: error: '__c_locale' was not declared in this scope; did you mean 'locale'?
1467 | __c_locale __tmp;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1468:38: error: '__tmp' was not declared in this scope
1468 | this->_S_create_c_locale(__tmp, __s);
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1866:7: error: '__c_locale' does not name a type; did you mean 'locale'?
1866 | __c_locale _M_c_locale_messages;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1895:26: error: expected ')' before '__cloc'
1895 | messages(__c_locale __cloc, const char* __s, size_t __refs = 0);
| ~ ^~~~~~~
| )
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:2064:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h: In constructor 'std::__cxx11::messages<_CharT>::messages(std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:45:22: error: class 'std::__cxx11::messages<_CharT>' does not have any field named '_M_c_locale_messages'
45 | : facet(__refs), _M_c_locale_messages(_S_get_c_locale()),
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:45:43: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
45 | : facet(__refs), _M_c_locale_messages(_S_get_c_locale()),
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:50:31: error: expected constructor, destructor, or type conversion before '(' token
50 | messages<_CharT>::messages(__c_locale __cloc, const char* __s,
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h: In destructor 'virtual std::__cxx11::messages<_CharT>::~messages()':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:83:27: error: '_M_c_locale_messages' was not declared in this scope; did you mean '_M_name_messages'?
83 | _S_destroy_c_locale(_M_c_locale_messages);
| ^~~~~~~~~~~~~~~~~~~~
| _M_name_messages
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:2067:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:288:7: error: '__c_locale' does not name a type; did you mean 'locale'?
288 | __c_locale _M_c_locale_codecvt;
| ^~~~~~~~~~
| locale
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:300:25: error: expected ')' before '__cloc'
300 | codecvt(__c_locale __cloc, size_t __refs = 0);
| ~ ^~~~~~~
| )
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h: In constructor 'std::codecvt<_InternT, _ExternT, _StateT>::codecvt(std::size_t)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:296:9: error: class 'std::codecvt<_InternT, _ExternT, _StateT>' does not have any field named '_M_c_locale_codecvt'
296 | _M_c_locale_codecvt(0)
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h: At global scope:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:341:31: error: 'mbstate_t' was not declared in this scope
341 | class codecvt<char, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:341:40: error: template argument 3 is invalid
341 | class codecvt<char, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:342:50: error: 'mbstate_t' was not declared in this scope
342 | : public __codecvt_abstract_base<char, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:342:59: error: template argument 3 is invalid
342 | : public __codecvt_abstract_base<char, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:404:34: error: 'mbstate_t' was not declared in this scope
404 | class codecvt<wchar_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:404:43: error: template argument 3 is invalid
404 | class codecvt<wchar_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:405:53: error: 'mbstate_t' was not declared in this scope
405 | : public __codecvt_abstract_base<wchar_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:405:62: error: template argument 3 is invalid
405 | : public __codecvt_abstract_base<wchar_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:470:35: error: 'mbstate_t' was not declared in this scope
470 | class codecvt<char16_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:470:44: error: template argument 3 is invalid
470 | class codecvt<char16_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:471:54: error: 'mbstate_t' was not declared in this scope
471 | : public __codecvt_abstract_base<char16_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:471:63: error: template argument 3 is invalid
471 | : public __codecvt_abstract_base<char16_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:527:35: error: 'mbstate_t' was not declared in this scope
527 | class codecvt<char32_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:527:44: error: template argument 3 is invalid
527 | class codecvt<char32_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:528:54: error: 'mbstate_t' was not declared in this scope
528 | : public __codecvt_abstract_base<char32_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:528:63: error: template argument 3 is invalid
528 | : public __codecvt_abstract_base<char32_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:727:42: error: 'mbstate_t' was not declared in this scope
727 | class codecvt_byname<char16_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:727:51: error: template argument 3 is invalid
727 | class codecvt_byname<char16_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:728:38: error: 'mbstate_t' was not declared in this scope
728 | : public codecvt<char16_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:728:47: error: template argument 3 is invalid
728 | : public codecvt<char16_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:745:42: error: 'mbstate_t' was not declared in this scope
745 | class codecvt_byname<char32_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:745:51: error: template argument 3 is invalid
745 | class codecvt_byname<char32_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:746:38: error: 'mbstate_t' was not declared in this scope
746 | : public codecvt<char32_t, char, mbstate_t>
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:746:47: error: template argument 3 is invalid
746 | : public codecvt<char32_t, char, mbstate_t>
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:805:52: error: 'mbstate_t' was not declared in this scope
805 | extern template class codecvt_byname<char, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:805:61: error: template argument 3 is invalid
805 | extern template class codecvt_byname<char, char, mbstate_t>;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:808:31: error: 'mbstate_t' was not declared in this scope
808 | const codecvt<char, char, mbstate_t>&
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:808:40: error: template argument 3 is invalid
808 | const codecvt<char, char, mbstate_t>&
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:809:35: error: 'mbstate_t' was not declared in this scope
809 | use_facet<codecvt<char, char, mbstate_t> >(const locale&);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:809:44: error: template argument 3 is invalid
809 | use_facet<codecvt<char, char, mbstate_t> >(const locale&);
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:809:5: error: template-id 'use_facet<<expression error> >' for 'const int& std::use_facet(const locale&)' does not match any template declaration
809 | use_facet<codecvt<char, char, mbstate_t> >(const locale&);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:195:5: note: candidate is: 'template<class _Facet> const _Facet& std::use_facet(const locale&)'
195 | use_facet(const locale& __loc)
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:813:35: error: 'mbstate_t' was not declared in this scope
813 | has_facet<codecvt<char, char, mbstate_t> >(const locale&);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:813:44: error: template argument 3 is invalid
813 | has_facet<codecvt<char, char, mbstate_t> >(const locale&);
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:813:5: error: template-id 'has_facet<<expression error> >' for 'bool std::has_facet(const locale&)' does not match any template declaration
813 | has_facet<codecvt<char, char, mbstate_t> >(const locale&);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:166:5: note: candidate is: 'template<class _Facet> bool std::has_facet(const locale&)'
166 | has_facet(const locale& __loc) throw()
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:816:55: error: 'mbstate_t' was not declared in this scope
816 | extern template class codecvt_byname<wchar_t, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:816:64: error: template argument 3 is invalid
816 | extern template class codecvt_byname<wchar_t, char, mbstate_t>;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:819:34: error: 'mbstate_t' was not declared in this scope
819 | const codecvt<wchar_t, char, mbstate_t>&
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:819:43: error: template argument 3 is invalid
819 | const codecvt<wchar_t, char, mbstate_t>&
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:820:38: error: 'mbstate_t' was not declared in this scope
820 | use_facet<codecvt<wchar_t, char, mbstate_t> >(const locale&);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:820:47: error: template argument 3 is invalid
820 | use_facet<codecvt<wchar_t, char, mbstate_t> >(const locale&);
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:820:5: error: template-id 'use_facet<<expression error> >' for 'const int& std::use_facet(const locale&)' does not match any template declaration
820 | use_facet<codecvt<wchar_t, char, mbstate_t> >(const locale&);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:195:5: note: candidate is: 'template<class _Facet> const _Facet& std::use_facet(const locale&)'
195 | use_facet(const locale& __loc)
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:824:38: error: 'mbstate_t' was not declared in this scope
824 | has_facet<codecvt<wchar_t, char, mbstate_t> >(const locale&);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:824:47: error: template argument 3 is invalid
824 | has_facet<codecvt<wchar_t, char, mbstate_t> >(const locale&);
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:824:5: error: template-id 'has_facet<<expression error> >' for 'bool std::has_facet(const locale&)' does not match any template declaration
824 | has_facet<codecvt<wchar_t, char, mbstate_t> >(const locale&);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:166:5: note: candidate is: 'template<class _Facet> bool std::has_facet(const locale&)'
166 | has_facet(const locale& __loc) throw()
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:828:56: error: 'mbstate_t' was not declared in this scope
828 | extern template class codecvt_byname<char16_t, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:828:65: error: template argument 3 is invalid
828 | extern template class codecvt_byname<char16_t, char, mbstate_t>;
| ^
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:829:56: error: 'mbstate_t' was not declared in this scope
829 | extern template class codecvt_byname<char32_t, char, mbstate_t>;
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:829:65: error: template argument 3 is invalid
829 | extern template class codecvt_byname<char32_t, char, mbstate_t>;
| ^
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:2069:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc: In member function 'virtual _InIter std::__cxx11::money_get<_CharT, _InIter>::do_get(iter_type, iter_type, bool, std::ios_base&, std::ios_base::iostate&, long double&) const':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc:377:58: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
377 | std::__convert_to_v(__str.c_str(), __units, __err, _S_get_c_locale());
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc: In member function 'virtual _OutIter std::__cxx11::money_put<_CharT, _OutIter>::do_put(iter_type, bool, std::ios_base&, char_type, long double) const':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc:604:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
604 | int __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size,
| ^~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc:611:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive]
611 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size,
| ^~~~~~~~~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/algorithm:61,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:65:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_algo.h: In function 'void std::random_shuffle(_RAIter, _RAIter)':
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_algo.h:4503:48: error: 'rand' is not a member of 'std'; did you mean 'rank'?
4503 | + std::rand() % ((__i - __first) + 1);
| ^~~~
| rank
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h: In function 'void tinyformat::detail::formatImpl(std::ostream&, const char*, const FormatArg*, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:824:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
824 | for(size_t i = 0, iend = result.size(); i < iend; ++i)
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:824:53: error: 'i' was not declared in this scope
824 | for(size_t i = 0, iend = result.size(); i < iend; ++i)
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:824:57: error: 'iend' was not declared in this scope
824 | for(size_t i = 0, iend = result.size(); i < iend; ++i)
| ^~~~
In file included from /home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsEngine.h:233,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Interrupt.h:25,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:143:
/home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h: At global scope:
/home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h:984:57: error: 'size_t' has not been declared
984 | extern void *AdobeSymbol2utf8(char*out, const char *in, size_t nwork,
| ^~~~~~
/home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h:990:8: error: 'size_t' does not name a type
990 | extern size_t Rf_ucstoutf8(char *s, const unsigned int c);
| ^~~~~~
/home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h:977:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
976 | #include <R_ext/libextern.h>
+++ |+#include <cstddef>
977 | LibExtern Rboolean R_interrupts_suspended;
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:168:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/export.h: In function 'std::wstring Rcpp::internal::as_string_elt__impl(SEXP, R_xlen_t, Rcpp::traits::true_type)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/export.h:31:50: error: there are no arguments to 'strlen' that depend on a template parameter, so a declaration of 'strlen' must be available [-fpermissive]
31 | return std::wstring(y, y+strlen(y) ) ;
| ^~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:169:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'int Rcpp::internal::integer_width(int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:206:32: error: '::log10' has not been declared; did you mean 'std::log10'?
206 | return n < 0 ? ( (int) ( ::log10( -n+0.5) + 2 ) ) : ( (int) ( ::log10( n+0.5) + 1 ) ) ;
| ^~~~~
| std::log10
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:66:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:206:69: error: '::log10' has not been declared; did you mean 'std::log10'?
206 | return n < 0 ? ( (int) ( ::log10( -n+0.5) + 2 ) ) : ( (int) ( ::log10( n+0.5) + 1 ) ) ;
| ^~~~~
| std::log10
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 15; typename Rcpp::traits::storage_type<RTYPE>::type = Rcomplex]':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:219:5: error: 'snprintf' was not declared in this scope
219 | snprintf(tmp1, 127, "%f", x.r);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:1:1: note: 'snprintf' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
+++ |+#include <cstdio>
1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8 -*-
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 14; typename Rcpp::traits::storage_type<RTYPE>::type = double]':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:241:5: error: 'snprintf' was not declared in this scope
241 | snprintf(tmp, 127, "%f", x);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:241:5: note: 'snprintf' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 13; typename Rcpp::traits::storage_type<RTYPE>::type = int]':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:249:5: error: 'snprintf' was not declared in this scope
249 | snprintf(buffer, NB, "%*d", integer_width(from), from);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:249:5: note: 'snprintf' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 24; typename Rcpp::traits::storage_type<RTYPE>::type = unsigned char]':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:255:5: error: 'snprintf' was not declared in this scope
255 | snprintf(buff, 3, "%02x", from);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:255:5: note: 'snprintf' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:170:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/as.h: In function 'T Rcpp::internal::as_string(SEXP, Rcpp::traits::true_type)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/as.h:63:38: error: there are no arguments to 'strlen' that depend on a template parameter, so a declaration of 'strlen' must be available [-fpermissive]
63 | return std::wstring(y, y+strlen(y));
| ^~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:189:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::make_charsexp__impl__wstring(const wchar_t*)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:45:13: error: 'wcstombs' was not declared in this scope
45 | wcstombs(buffer, data, MAXELTSIZE);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::make_charsexp__impl__wstring(wchar_t)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:51:13: error: 'wcstombs' was not declared in this scope
51 | wcstombs(buffer, x, MAXELTSIZE);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl(InputIterator, InputIterator, Rcpp::traits::true_type)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:103:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
103 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:105:50: error: 'size' was not declared in this scope
105 | Shield<SEXP> x(Rf_allocVector(RTYPE, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:114:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
114 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:116:50: error: 'size' was not declared in this scope
116 | Shield<SEXP> x(Rf_allocVector(RTYPE, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::input_iterator_tag)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:149:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
149 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:151:50: error: 'size' was not declared in this scope
151 | Shield<SEXP> x(Rf_allocVector(RTYPE, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___generic(InputIterator, InputIterator)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:190:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
190 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:191:51: error: 'size' was not declared in this scope
191 | Shield<SEXP> x(Rf_allocVector(VECSXP, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:192:19: error: expected ';' before 'i'
192 | size_t i =0;
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:193:19: error: 'i' was not declared in this scope
193 | while(i < size) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_string_tag)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:237:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
237 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:238:51: error: 'size' was not declared in this scope
238 | Shield<SEXP> x(Rf_allocVector(STRSXP, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:239:19: error: expected ';' before 'i'
239 | size_t i = 0;
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:240:19: error: 'i' was not declared in this scope
240 | while(i < size) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl__cast(InputIterator, InputIterator, Rcpp::traits::false_type)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:262:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
262 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:264:50: error: 'size' was not declared in this scope
264 | Shield<SEXP> x(Rf_allocVector(RTYPE, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:268:19: error: expected ';' before 'i'
268 | size_t i =0;
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:270:20: error: 'i' was not declared in this scope
270 | for (; i<size; i++, ++first) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl__cast(InputIterator, InputIterator, Rcpp::traits::true_type)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:290:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
290 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:292:50: error: 'size' was not declared in this scope
292 | Shield<SEXP> x(Rf_allocVector(RTYPE, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:296:19: error: expected ';' before 'i'
296 | size_t i =0;
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:298:20: error: 'i' was not declared in this scope
298 | for (; i<size; i++, ++first) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_pairstring_generic_tag)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:336:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
336 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:337:51: error: 'size' was not declared in this scope
337 | Shield<SEXP> x(Rf_allocVector(VECSXP, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:339:19: error: expected ';' before 'i'
339 | size_t i =0;
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:342:19: error: 'i' was not declared in this scope
342 | while(i < size) { // #nocov start
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_pairstring_string_tag)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:367:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
367 | size_t size = std::distance(first, last);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:368:51: error: 'size' was not declared in this scope
368 | Shield<SEXP> x(Rf_allocVector(STRSXP, size));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:370:24: error: expected ';' before 'i'
370 | for (size_t i = 0; i < size; i++, ++first) {
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:370:32: error: 'i' was not declared in this scope
370 | for (size_t i = 0; i < size; i++, ++first) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable__logical(const T&, Rcpp::traits::true_type)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:535:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
535 | size_t size = object.size();
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:536:51: error: 'size' was not declared in this scope
536 | Shield<SEXP> x(Rf_allocVector(LGLSXP, size));
| ^~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:35:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:42:29: error: 'size_t' does not name a type
42 | Dimension(const size_t& n1) : dims(1){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:1:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
+++ |+#include <cstddef>
1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; indent-tabs-mode: nil; -*-
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:29: error: 'size_t' does not name a type
45 | Dimension(const size_t& n1, const size_t& n2) : dims(2){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:29: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:47: error: 'size_t' does not name a type
45 | Dimension(const size_t& n1, const size_t& n2) : dims(2){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:47: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:29: error: 'size_t' does not name a type
49 | Dimension(const size_t& n1, const size_t& n2, const size_t& n3) : dims(3){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:29: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:47: error: 'size_t' does not name a type
49 | Dimension(const size_t& n1, const size_t& n2, const size_t& n3) : dims(3){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:47: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:65: error: 'size_t' does not name a type
49 | Dimension(const size_t& n1, const size_t& n2, const size_t& n3) : dims(3){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:65: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:23,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Vector.h:51,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:40:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Subsetter.h: In member function 'void Rcpp::SubsetProxy<RTYPE, StoragePolicy, RHS_RTYPE, RHS_NA, RHS_T>::get_indices(Rcpp::traits::identity<Rcpp::traits::int2type<14> >)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Subsetter.h:163:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
163 | for(size_t i = 0 ; i < tmp.size() ; ++i) {
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Subsetter.h:163:28: error: 'i' was not declared in this scope; did you mean 'is'?
163 | for(size_t i = 0 ; i < tmp.size() ; ++i) {
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:343:36: error: 'size_t' does not name a type
343 | inline Proxy operator()( const size_t& i) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:24:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
23 | #include <Rcpp/vector/Subsetter.h>
+++ |+#include <cstddef>
24 |
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:346:42: error: 'size_t' does not name a type
346 | inline const_Proxy operator()( const size_t& i) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:346:42: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:350:28: error: 'size_t' does not name a type
350 | inline Proxy at( const size_t& i) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:350:28: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:353:34: error: 'size_t' does not name a type
353 | inline const_Proxy at( const size_t& i) const { // #nocov start
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:353:34: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:36: error: 'size_t' does not name a type
357 | inline Proxy operator()( const size_t& i, const size_t& j) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:36: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:53: error: 'size_t' does not name a type
357 | inline Proxy operator()( const size_t& i, const size_t& j) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:53: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:42: error: 'size_t' does not name a type
360 | inline const_Proxy operator()( const size_t& i, const size_t& j) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:42: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:59: error: 'size_t' does not name a type
360 | inline const_Proxy operator()( const size_t& i, const size_t& j) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:59: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Vector.h:57:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:137:36: error: 'size_t' does not name a type
137 | inline Proxy operator()( const size_t& i, const size_t& j) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:1:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
+++ |+#include <cstddef>
1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; indent-tabs-mode: nil; -*-
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:137:53: error: 'size_t' does not name a type
137 | inline Proxy operator()( const size_t& i, const size_t& j) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:137:53: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:42: error: 'size_t' does not name a type
140 | inline const_Proxy operator()( const size_t& i, const size_t& j) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:42: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:59: error: 'size_t' does not name a type
140 | inline const_Proxy operator()( const size_t& i, const size_t& j) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:59: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:28: error: 'size_t' does not name a type
144 | inline Proxy at( const size_t& i, const size_t& j) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:28: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:45: error: 'size_t' does not name a type
144 | inline Proxy at( const size_t& i, const size_t& j) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:45: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:34: error: 'size_t' does not name a type
147 | inline const_Proxy at( const size_t& i, const size_t& j) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:34: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:51: error: 'size_t' does not name a type
147 | inline const_Proxy at( const size_t& i, const size_t& j) const {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:51: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Vector.h:68:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::append_wide_string(const T&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:41: error: there are no arguments to 'strlen' that depend on a template parameter, so a declaration of 'strlen' must be available [-fpermissive]
336 | std::wstring tmp(buf, buf + strlen(buf));
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::replace_first(const char*, const char*)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:421:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
421 | size_t index = std::distance(buffer.begin(), std::search(buffer.begin(), buffer.end(), s2.begin(), s2.end()));
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:422:17: error: 'index' was not declared in this scope
422 | if (index != std::string::npos) buffer.replace(index, strlen(s), news);
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:422:67: error: 'strlen' was not declared in this scope
422 | if (index != std::string::npos) buffer.replace(index, strlen(s), news);
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:1:1: note: 'strlen' is defined in header '<cstring>'; this is probably fixable by adding '#include <cstring>'
+++ |+#include <cstring>
1 |
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::replace_last(const char*, const char*)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:447:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
447 | size_t index = std::distance(buffer.begin(), std::find_end(buffer.begin(), buffer.end(), s2.begin(), s2.end()));
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:448:17: error: 'index' was not declared in this scope
448 | if (index != std::string::npos) buffer.replace(index, strlen(s), news);
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:448:67: error: 'strlen' was not declared in this scope
448 | if (index != std::string::npos) buffer.replace(index, strlen(s), news);
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:448:67: note: 'strlen' is defined in header '<cstring>'; this is probably fixable by adding '#include <cstring>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::replace_all(const char*, const char*)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:478:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
478 | size_t index = std::distance(buffer.begin(), iter);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:479:21: error: 'index' was not declared in this scope
479 | if (index != std::string::npos) buffer.replace(index, strlen(s), news);
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:479:71: error: 'strlen' was not declared in this scope
479 | if (index != std::string::npos) buffer.replace(index, strlen(s), news);
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:479:71: note: 'strlen' is defined in header '<cstring>'; this is probably fixable by adding '#include <cstring>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String::operator std::wstring() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:573:40: error: 'strlen' was not declared in this scope
573 | return std::wstring(s, s + strlen(s));
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:573:40: note: 'strlen' is defined in header '<cstring>'; this is probably fixable by adding '#include <cstring>'
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:47:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:55:28: error: 'size_t' does not name a type
55 | void insert( const size_t& index, const T& object) ;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:1:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
+++ |+#include <cstddef>
1 | // Copyright (C) 2013 Romain Francois
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:79:28: error: 'size_t' does not name a type
79 | void remove( const size_t& index );
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:79:28: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:57:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DataFrame.h: In member function 'int Rcpp::DataFrame_Impl<StoragePolicy>::nrow() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DataFrame.h:82:32: error: no matching function for call to 'abs(int&)'
82 | return std::abs(INTEGER(rn)[1]);
| ~~~~~~~~^~~~~~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:896:5: note: candidate: 'template<class _Tp> _Tp std::abs(const complex<_Tp>&)'
896 | abs(const complex<_Tp>& __z) { return __complex_abs(__z); }
| ^~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:896:5: note: template argument deduction/substitution failed:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DataFrame.h:82:32: note: mismatched types 'const std::complex<_Tp>' and 'int'
82 | return std::abs(INTEGER(rn)[1]);
| ~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:59:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h: In function 'std::string Rcpp::demangler_one(const char*)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:54:9: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
54 | size_t last_open = buffer.find_last_of('(');
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:55:15: error: expected ';' before 'last_close'
55 | size_t last_close = buffer.find_last_of(')');
| ^~~~~~~~~~~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:56:13: error: 'last_open' was not declared in this scope
56 | if (last_open == std::string::npos ||
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:57:13: error: 'last_close' was not declared in this scope
57 | last_close == std::string::npos) {
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:60:51: error: 'last_open' was not declared in this scope
60 | std::string function_name = buffer.substr(last_open + 1, last_close - last_open - 1);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:60:66: error: 'last_close' was not declared in this scope
60 | std::string function_name = buffer.substr(last_open + 1, last_close - last_open - 1);
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:62:15: error: expected ';' before 'function_plus'
62 | size_t function_plus = function_name.find_last_of('+');
| ^~~~~~~~~~~~~~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:63:13: error: 'function_plus' was not declared in this scope; did you mean 'function_name'?
63 | if (function_plus != std::string::npos) {
| ^~~~~~~~~~~~~
| function_name
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h: In member function 'void Rcpp::exception::record_stack_trace()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:78:15: error: 'size_t' does not name a type
78 | const size_t max_depth = 100;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:39:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
38 | # include <execinfo.h>
+++ |+#include <cstddef>
39 | # define RCPP_DEMANGLER_ENABLED 1
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:80:27: error: 'max_depth' was not declared in this scope; did you mean 'stack_depth'?
80 | void *stack_addrs[max_depth];
| ^~~~~~~~~
| stack_depth
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:82:33: error: 'stack_addrs' was not declared in this scope
82 | stack_depth = backtrace(stack_addrs, max_depth);
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:87:9: error: 'free' was not declared in this scope
87 | free(stack_strings); // malloc()ed by backtrace_symbols
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:39:1: note: 'free' is defined in header '<cstdlib>'; this is probably fixable by adding '#include <cstdlib>'
38 | # include <execinfo.h>
+++ |+#include <cstdlib>
39 | # define RCPP_DEMANGLER_ENABLED 1
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:25,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:64:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Date.h: In member function 'std::string Rcpp::Date::format(const char*) const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Date.h:111:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
111 | size_t res = ::strftime(txt, 31, fmt, &temp);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Date.h:112:17: error: 'res' was not declared in this scope
112 | if (res == 0) {
| ^~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:27:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h: In member function 'std::vector<Rcpp::Date, std::allocator<Rcpp::Date> > Rcpp::newDateVector::getDates() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:40:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
40 | size_t n = this->size();
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:41:33: error: 'n' was not declared in this scope
41 | std::vector<Date> v(n);
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:42:25: error: expected ';' before 'i'
42 | for (size_t i=0; i<n; i++)
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:42:30: error: 'i' was not declared in this scope; did you mean 'is'?
42 | for (size_t i=0; i<n; i++)
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h: In function 'std::ostream& Rcpp::operator<<(std::ostream&, newDateVector)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:66:9: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
66 | size_t n = d.size();
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:67:20: error: expected ';' before 'i'
67 | for (size_t i=0; i<n; i++) {
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:67:26: error: 'i' was not declared in this scope
67 | for (size_t i=0; i<n; i++) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:67:28: error: 'n' was not declared in this scope
67 | for (size_t i=0; i<n; i++) {
| ^
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:29:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In member function 'std::string Rcpp::Datetime::format(const char*) const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:77:54: error: call of overloaded 'floor(const double&)' is ambiguous
77 | time_t t = static_cast<time_t>(std::floor(m_dt));
| ~~~~~~~~~~^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)'
257 | floor(float __x)
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)'
261 | floor(long double __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:79:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
79 | size_t res = ::strftime(txtiso, 63, fmt, &temp);
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:80:17: error: 'res' was not declared in this scope
80 | if (res == 0) {
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:83:25: error: '::snprintf' has not been declared
83 | res = ::snprintf(txtsec, 63, "%s.%06d", txtiso, m_us);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:1:1: note: 'snprintf' is defined in header '<cstdio>'; this is probably fixable by adding '#include <cstdio>'
+++ |+#include <cstdio>
1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; indent-tabs-mode: nil; -*-
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In member function 'void Rcpp::Datetime::update_tm()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:102:39: error: call of overloaded 'floor(double&)' is ambiguous
102 | double dt = std::floor(m_dt);
| ~~~~~~~~~~^~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)'
257 | floor(float __x)
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)'
261 | floor(long double __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In function 'Rcpp::Datetime Rcpp::operator+(const Datetime&, double)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:141:31: error: call of overloaded 'floor(double&)' is ambiguous
141 | double dt = std::floor(newdt.m_dt);
| ~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)'
257 | floor(float __x)
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)'
261 | floor(long double __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In function 'Rcpp::Datetime Rcpp::operator+(const Datetime&, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:151:31: error: call of overloaded 'floor(double&)' is ambiguous
151 | double dt = std::floor(newdt.m_dt);
| ~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)'
257 | floor(float __x)
| ^~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)'
261 | floor(long double __x)
| ^~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:31:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h: In member function 'std::vector<Rcpp::Datetime, std::allocator<Rcpp::Datetime> > Rcpp::newDatetimeVector::getDatetimes() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:48:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
48 | size_t n = this->size();
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:49:37: error: 'n' was not declared in this scope
49 | std::vector<Datetime> v(n);
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:50:25: error: expected ';' before 'i'
50 | for (size_t i=0; i<n; i++)
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:50:30: error: 'i' was not declared in this scope; did you mean 'is'?
50 | for (size_t i=0; i<n; i++)
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h: In function 'std::ostream& Rcpp::operator<<(std::ostream&, newDatetimeVector)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:82:9: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
82 | size_t n = d.size();
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:83:20: error: expected ';' before 'i'
83 | for (size_t i=0; i<n; i++) {
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:83:26: error: 'i' was not declared in this scope
83 | for (size_t i=0; i<n; i++) {
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:83:28: error: 'n' was not declared in this scope
83 | for (size_t i=0; i<n; i++) {
| ^
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Module.h:140,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:69:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h: In member function 'Rcpp::IntegerVector Rcpp::Module::functions_arity()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:73:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
73 | size_t n = functions.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:74:34: error: 'n' was not declared in this scope
74 | IntegerVector x( n ) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:77:29: error: expected ';' before 'i'
77 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:77:34: error: 'i' was not declared in this scope; did you mean 'is'?
77 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h: In member function 'Rcpp::CharacterVector Rcpp::Module::functions_names()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:89:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
89 | size_t n = functions.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:90:40: error: 'n' was not declared in this scope
90 | CharacterVector names( n );
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:92:29: error: expected ';' before 'i'
92 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:92:34: error: 'i' was not declared in this scope; did you mean 'is'?
92 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h: In member function 'Rcpp::CharacterVector Rcpp::Module::class_names()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:102:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
102 | size_t n = classes.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:103:36: error: 'n' was not declared in this scope
103 | CharacterVector names( n );
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:105:25: error: expected ';' before 'i'
105 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:105:30: error: 'i' was not declared in this scope; did you mean 'is'?
105 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h: In member function 'Rcpp::CharacterVector Rcpp::Module::complete()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:120:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
120 | size_t nf = functions.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:121:20: error: expected ';' before 'nc'
121 | size_t nc = classes.size() ;
| ^~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:122:20: error: expected ';' before 'n'
122 | size_t n = nf + nc ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:123:34: error: 'n' was not declared in this scope
123 | CharacterVector res( n ) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:124:20: error: expected ';' before 'i'
124 | size_t i=0;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:127:20: error: 'i' was not declared in this scope; did you mean 'is'?
127 | for( ; i<nf; i++, ++it) {
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:127:22: error: 'nf' was not declared in this scope
127 | for( ; i<nf; i++, ++it) {
| ^~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:137:25: error: expected ';' before 'j'
137 | for( size_t j=0; j<nc; j++, i++, ++cit){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:137:30: error: 'j' was not declared in this scope
137 | for( size_t j=0; j<nc; j++, i++, ++cit){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:137:32: error: 'nc' was not declared in this scope
137 | for( size_t j=0; j<nc; j++, i++, ++cit){
| ^~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:137:41: error: 'i' was not declared in this scope; did you mean 'is'?
137 | for( size_t j=0; j<nc; j++, i++, ++cit){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h: In member function 'SEXPREC* Rcpp::Module::get_function(const std::string&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:156:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
156 | size_t n = functions.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:158:25: error: expected ';' before 'i'
158 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:158:30: error: 'i' was not declared in this scope; did you mean 'is'?
158 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:158:32: error: 'n' was not declared in this scope
158 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h: In member function 'void* (* Rcpp::Module::get_function_ptr(const std::string&))()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:181:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
181 | size_t n = functions.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:183:29: error: expected ';' before 'i'
183 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:183:34: error: 'i' was not declared in this scope; did you mean 'is'?
183 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/Module.h:183:36: error: 'n' was not declared in this scope
183 | for( size_t i=0; i<n; i++, ++it){
| ^
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Module.h:523:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'SEXPREC* Rcpp::class_<Class>::newInstance(SEXPREC**, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:138:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
138 | size_t n = constructors.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:139:25: error: expected ';' before 'i'
139 | for( size_t i=0; i<n; i++ ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:139:30: error: 'i' was not declared in this scope; did you mean 'is'?
139 | for( size_t i=0; i<n; i++ ){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:139:32: error: 'n' was not declared in this scope
139 | for( size_t i=0; i<n; i++ ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:149:13: error: 'n' was not declared in this scope
149 | n = factories.size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:150:25: error: expected ';' before 'i'
150 | for( size_t i=0; i<n; i++){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:150:30: error: 'i' was not declared in this scope; did you mean 'is'?
150 | for( size_t i=0; i<n; i++){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'bool Rcpp::class_<Class>::has_default_constructor()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:164:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
164 | size_t n = constructors.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:166:25: error: expected ';' before 'i'
166 | for( size_t i=0; i<n; i++ ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:166:30: error: 'i' was not declared in this scope; did you mean 'is'?
166 | for( size_t i=0; i<n; i++ ){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:166:32: error: 'n' was not declared in this scope
166 | for( size_t i=0; i<n; i++ ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:170:13: error: 'n' was not declared in this scope
170 | n = factories.size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:172:25: error: expected ';' before 'i'
172 | for( size_t i=0; i<n; i++ ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:172:30: error: 'i' was not declared in this scope; did you mean 'is'?
172 | for( size_t i=0; i<n; i++ ){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'SEXPREC* Rcpp::class_<Class>::invoke(SEXP, SEXP, SEXPREC**, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:184:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
184 | size_t n = mets->size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:187:25: error: expected ';' before 'i'
187 | for( size_t i=0; i<n; i++, ++it ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:187:30: error: 'i' was not declared in this scope; did you mean 'is'?
187 | for( size_t i=0; i<n; i++, ++it ){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:187:32: error: 'n' was not declared in this scope
187 | for( size_t i=0; i<n; i++, ++it ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'SEXPREC* Rcpp::class_<Class>::invoke_void(SEXP, SEXP, SEXPREC**, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:211:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
211 | size_t n = mets->size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:214:25: error: expected ';' before 'i'
214 | for( size_t i=0; i<n; i++, ++it ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:214:30: error: 'i' was not declared in this scope; did you mean 'is'?
214 | for( size_t i=0; i<n; i++, ++it ){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:214:32: error: 'n' was not declared in this scope
214 | for( size_t i=0; i<n; i++, ++it ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'SEXPREC* Rcpp::class_<Class>::invoke_notvoid(SEXP, SEXP, SEXPREC**, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:233:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
233 | size_t n = mets->size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:236:25: error: expected ';' before 'i'
236 | for( size_t i=0; i<n; i++, ++it ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:236:30: error: 'i' was not declared in this scope; did you mean 'is'?
236 | for( size_t i=0; i<n; i++, ++it ){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:236:32: error: 'n' was not declared in this scope
236 | for( size_t i=0; i<n; i++, ++it ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::CharacterVector Rcpp::class_<Class>::method_names()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:328:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
328 | size_t n = 0 ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:329:20: error: expected ';' before 's'
329 | size_t s = vec_methods.size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:331:25: error: expected ';' before 'i'
331 | for( size_t i=0; i<s; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:331:30: error: 'i' was not declared in this scope; did you mean 'is'?
331 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:331:32: error: 's' was not declared in this scope; did you mean 'is'?
331 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:332:17: error: 'n' was not declared in this scope
332 | n += (it->second)->size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:334:39: error: 'n' was not declared in this scope
334 | Rcpp::CharacterVector out(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:336:20: error: expected ';' before 'k'
336 | size_t k = 0 ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:337:25: error: expected ';' before 'i'
337 | for( size_t i=0; i<s; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:337:30: error: 'i' was not declared in this scope; did you mean 'is'?
337 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:337:32: error: 's' was not declared in this scope; did you mean 'is'?
337 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:340:29: error: expected ';' before 'j'
340 | for( size_t j=0; j<n; j++, k++){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:340:34: error: 'j' was not declared in this scope
340 | for( size_t j=0; j<n; j++, k++){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:340:44: error: 'k' was not declared in this scope
340 | for( size_t j=0; j<n; j++, k++){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::IntegerVector Rcpp::class_<Class>::methods_arity()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:348:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
348 | size_t n = 0 ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:349:20: error: expected ';' before 's'
349 | size_t s = vec_methods.size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:351:25: error: expected ';' before 'i'
351 | for( size_t i=0; i<s; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:351:30: error: 'i' was not declared in this scope; did you mean 'is'?
351 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:351:32: error: 's' was not declared in this scope; did you mean 'is'?
351 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:352:17: error: 'n' was not declared in this scope
352 | n += (it->second)->size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:354:42: error: 'n' was not declared in this scope
354 | Rcpp::CharacterVector mnames(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:357:20: error: expected ';' before 'k'
357 | size_t k = 0 ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:358:25: error: expected ';' before 'i'
358 | for( size_t i=0; i<s; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:358:30: error: 'i' was not declared in this scope; did you mean 'is'?
358 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:358:32: error: 's' was not declared in this scope; did you mean 'is'?
358 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:362:29: error: expected ';' before 'j'
362 | for( size_t j=0; j<n; j++, k++, ++m_it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:362:34: error: 'j' was not declared in this scope
362 | for( size_t j=0; j<n; j++, k++, ++m_it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:362:44: error: 'k' was not declared in this scope
362 | for( size_t j=0; j<n; j++, k++, ++m_it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::LogicalVector Rcpp::class_<Class>::methods_voidness()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:372:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
372 | size_t n = 0 ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:373:20: error: expected ';' before 's'
373 | size_t s = vec_methods.size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:375:25: error: expected ';' before 'i'
375 | for( size_t i=0; i<s; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:375:30: error: 'i' was not declared in this scope; did you mean 'is'?
375 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:375:32: error: 's' was not declared in this scope; did you mean 'is'?
375 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:376:17: error: 'n' was not declared in this scope
376 | n += (it->second)->size() ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:378:42: error: 'n' was not declared in this scope
378 | Rcpp::CharacterVector mnames(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:381:20: error: expected ';' before 'k'
381 | size_t k = 0 ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:382:25: error: expected ';' before 'i'
382 | for( size_t i=0; i<s; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:382:30: error: 'i' was not declared in this scope; did you mean 'is'?
382 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:382:32: error: 's' was not declared in this scope; did you mean 'is'?
382 | for( size_t i=0; i<s; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:386:29: error: expected ';' before 'j'
386 | for( size_t j=0; j<n; j++, k++, ++m_it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:386:34: error: 'j' was not declared in this scope
386 | for( size_t j=0; j<n; j++, k++, ++m_it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:386:44: error: 'k' was not declared in this scope
386 | for( size_t j=0; j<n; j++, k++, ++m_it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::CharacterVector Rcpp::class_<Class>::property_names()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:397:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
397 | size_t n = properties.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:398:39: error: 'n' was not declared in this scope
398 | Rcpp::CharacterVector out(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:400:25: error: expected ';' before 'i'
400 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:400:30: error: 'i' was not declared in this scope; did you mean 'is'?
400 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::List Rcpp::class_<Class>::property_classes()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:407:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
407 | size_t n = properties.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:408:42: error: 'n' was not declared in this scope
408 | Rcpp::CharacterVector pnames(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:411:25: error: expected ';' before 'i'
411 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:411:30: error: 'i' was not declared in this scope; did you mean 'is'?
411 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::CharacterVector Rcpp::class_<Class>::complete()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:420:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
420 | size_t n = vec_methods.size() - specials ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:421:20: error: expected ';' before 'ntotal'
421 | size_t ntotal = n + properties.size() ;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:422:39: error: 'ntotal' was not declared in this scope
422 | Rcpp::CharacterVector out(ntotal) ;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:425:20: error: expected ';' before 'i'
425 | size_t i=0 ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:426:20: error: 'i' was not declared in this scope; did you mean 'is'?
426 | for( ; i<n; ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:426:22: error: 'n' was not declared in this scope
426 | for( ; i<n; ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:439:20: error: 'i' was not declared in this scope; did you mean 'is'?
439 | for( ; i<ntotal; i++, ++prop_it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::List Rcpp::class_<Class>::fields(const Rcpp::class_Base::XP_Class&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:461:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
461 | size_t n = properties.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:462:42: error: 'n' was not declared in this scope
462 | Rcpp::CharacterVector pnames(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:465:25: error: expected ';' before 'i'
465 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:465:30: error: 'i' was not declared in this scope; did you mean 'is'?
465 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::List Rcpp::class_<Class>::getMethods(const Rcpp::class_Base::XP_Class&, std::string&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:478:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
478 | size_t n = vec_methods.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:479:42: error: 'n' was not declared in this scope
479 | Rcpp::CharacterVector mnames(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:483:25: error: expected ';' before 'i'
483 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:483:30: error: 'i' was not declared in this scope; did you mean 'is'?
483 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h: In member function 'Rcpp::List Rcpp::class_<Class>::getConstructors(const Rcpp::class_Base::XP_Class&, std::string&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:493:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
493 | size_t n = constructors.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:494:28: error: 'n' was not declared in this scope
494 | Rcpp::List out(n) ;
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:496:25: error: expected ';' before 'i'
496 | for( size_t i=0; i<n; i++, ++it){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:496:30: error: 'i' was not declared in this scope; did you mean 'is'?
496 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/block.h:30,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/sugar.h:26,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:78:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared; did you mean 'std::exp'?
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' declared here
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared; did you mean 'std::exp'?
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' declared here
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::exp(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::exp(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives:
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared; did you mean 'std::acos'?
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' declared here
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared; did you mean 'std::acos'?
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' declared here
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::acos(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::acos(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives:
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos'
2221 | acos(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1'
26 | VECTORIZED_MATH_1(acos,::acos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared; did you mean 'std::asin'?
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' declared here
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared; did you mean 'std::asin'?
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' declared here
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::asin(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::asin(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives:
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared; did you mean 'std::atan'?
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' declared here
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared; did you mean 'std::atan'?
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' declared here
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::atan(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::atan(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives:
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared; did you mean 'std::ceil'?
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' declared here
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared; did you mean 'std::ceil'?
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' declared here
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceil(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceil(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives:
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1'
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceiling(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1'
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1'
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1'
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceiling(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives:
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil'
174 | ceil(_Tp __x)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil'
29 | VECTORIZED_MATH_1(ceil,::ceil)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1'
30 | VECTORIZED_MATH_1(ceiling,::ceil)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared; did you mean 'std::cos'?
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' declared here
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared; did you mean 'std::cos'?
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' declared here
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cos(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cos(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives:
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared; did you mean 'std::cosh'?
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' declared here
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared; did you mean 'std::cosh'?
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' declared here
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cosh(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cosh(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives:
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared; did you mean 'std::floor'?
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' declared here
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared; did you mean 'std::floor'?
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' declared here
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::floor(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::floor(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives:
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor'
269 | floor(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1'
33 | VECTORIZED_MATH_1(floor,::floor)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared; did you mean 'std::log'?
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' declared here
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared; did you mean 'std::log'?
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' declared here
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives:
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared; did you mean 'std::log10'?
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared; did you mean 'std::log10'?
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log10(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log10(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives:
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10'
1095 | log10(const complex<_Tp>& __z)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1'
35 | VECTORIZED_MATH_1(log10,::log10)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared; did you mean 'std::sqrt'?
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' declared here
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared; did you mean 'std::sqrt'?
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' declared here
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sqrt(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sqrt(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives:
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared; did you mean 'std::sin'?
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' declared here
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared; did you mean 'std::sin'?
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' declared here
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sin(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sin(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives:
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared; did you mean 'std::sinh'?
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' declared here
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared; did you mean 'std::sinh'?
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' declared here
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sinh(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sinh(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives:
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared; did you mean 'std::tan'?
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' declared here
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared; did you mean 'std::tan'?
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' declared here
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tan(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tan(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives:
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1'
39 | VECTORIZED_MATH_1(tan,::tan)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared; did you mean 'std::tanh'?
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' declared here
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared; did you mean 'std::tanh'?
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' declared here
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tanh(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tanh(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives:
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh'
1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1'
40 | VECTORIZED_MATH_1(tanh,::tanh)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1'
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::abs(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1'
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1'
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1'
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::abs(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'?
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1'
42 | VECTORIZED_MATH_1(abs,::fabs)
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared; did you mean 'std::expm1'?
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' declared here
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared; did you mean 'std::expm1'?
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' declared here
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::expm1(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::expm1(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives:
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared; did you mean 'std::log1p'?
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' declared here
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared; did you mean 'std::log1p'?
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1'
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' declared here
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid
86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log1p(const VectorBase<14, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1'
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid
88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1'
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1'
87 | __NAME__( const VectorBase<REALSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid
90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1'
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1'
91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid
93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log1p(const VectorBase<13, NA_, T>&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives:
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1'
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^~~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid
95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:32,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/sugar.h:31:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'double Rcpp::internal::complex__Mod(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:58:51: error: '::sqrt' has not been declared
58 | inline double complex__Mod( Rcomplex x){ return ::sqrt( x.i * x.i + x.r * x.r) ; }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:58:51: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'double Rcpp::internal::complex__Arg(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:65:52: error: '::atan2' has not been declared; did you mean 'std::atan2'?
65 | inline double complex__Arg( Rcomplex x ){ return ::atan2(x.i, x.r); }
| ^~~~~
| std::atan2
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1056:5: note: 'std::atan2' declared here
1056 | atan2(_Tp __y, _Up __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__exp(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:69:21: error: '::exp' has not been declared
69 | double expx = ::exp(x.r);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:69:21: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp'
25 | VECTORIZED_MATH_1(exp,::exp)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:70:20: error: '::cos' has not been declared
70 | y.r = expx * ::cos(x.i);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:70:20: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:71:20: error: '::sin' has not been declared
71 | y.i = expx * ::sin(x.i);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:71:20: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__log(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:76:13: error: '::atan2' has not been declared; did you mean 'std::atan2'?
76 | y.i = ::atan2(x.i, x.r);
| ^~~~~
| std::atan2
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1056:5: note: 'std::atan2' declared here
1056 | atan2(_Tp __y, _Up __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:77:13: error: '::log' has not been declared
77 | y.r = ::log(::hypot(x.r, x.i));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:77:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:77:19: error: '::hypot' has not been declared; did you mean 'std::hypot'?
77 | y.r = ::log(::hypot(x.r, x.i));
| ^~~~~
| std::hypot
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here
3708 | hypot(_Tp __x, _Up __y)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__sqrt(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:84:18: error: '::hypot' has not been declared; did you mean 'std::hypot'?
84 | if( (mag = ::hypot(z.r, z.i)) == 0.0)
| ^~~~~
| std::hypot
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here
3708 | hypot(_Tp __x, _Up __y)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:87:17: error: '::sqrt' has not been declared
87 | r.r = ::sqrt(0.5 * (mag + z.r) );
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:87:17: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:91:17: error: '::sqrt' has not been declared
91 | r.i = ::sqrt(0.5 * (mag - z.r) );
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:91:17: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__cos(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:13: error: '::cos' has not been declared
100 | r.r = ::cos(z.r) * ::cosh(z.i);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:26: error: '::cosh' has not been declared
100 | r.r = ::cos(z.r) * ::cosh(z.i);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:26: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:15: error: '::sin' has not been declared
101 | r.i = - ::sin(z.r) * ::sinh(z.i);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:15: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:28: error: '::sinh' has not been declared
101 | r.i = - ::sin(z.r) * ::sinh(z.i);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:28: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__cosh(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:13: error: '::cos' has not been declared
106 | r.r = ::cos(-z.i) * ::cosh( z.r);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:27: error: '::cosh' has not been declared
106 | r.r = ::cos(-z.i) * ::cosh( z.r);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:27: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:15: error: '::sin' has not been declared
107 | r.i = - ::sin(-z.i) * ::sinh(z.r);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:15: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:29: error: '::sinh' has not been declared
107 | r.i = - ::sin(-z.i) * ::sinh(z.r);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:29: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__sin(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:13: error: '::sin' has not been declared
112 | r.r = ::sin(z.r) * ::cosh(z.i);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:26: error: '::cosh' has not been declared
112 | r.r = ::sin(z.r) * ::cosh(z.i);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:26: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:13: error: '::cos' has not been declared
113 | r.i = ::cos(z.r) * ::sinh(z.i);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:26: error: '::sinh' has not been declared
113 | r.i = ::cos(z.r) * ::sinh(z.i);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:26: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__tan(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:13: error: '::cos' has not been declared
121 | den = ::cos(x2) + ::cosh(y2);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos'
1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos'
31 | VECTORIZED_MATH_1(cos,::cos)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:25: error: '::cosh' has not been declared
121 | den = ::cos(x2) + ::cosh(y2);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:25: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh'
1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh'
32 | VECTORIZED_MATH_1(cosh,::cosh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:122:13: error: '::sin' has not been declared
122 | r.r = ::sin(x2)/den;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:122:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin'
1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin'
37 | VECTORIZED_MATH_1(sin,::sin)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:125:24: error: '::fabs' has not been declared; did you mean 'std::fabs'?
125 | if (ISNAN(y2) || ::fabs(y2) < 50.0)
| ^~~~
| std::fabs
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:126:17: error: '::sinh' has not been declared
126 | r.i = ::sinh(y2)/den;
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:126:17: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh'
1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh'
38 | VECTORIZED_MATH_1(sinh,::sinh)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__asin(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:138:18: error: '::hypot' has not been declared; did you mean 'std::hypot'?
138 | t1 = 0.5 * ::hypot(x + 1, y);
| ^~~~~
| std::hypot
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here
3708 | hypot(_Tp __x, _Up __y)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:139:18: error: '::hypot' has not been declared; did you mean 'std::hypot'?
139 | t2 = 0.5 * ::hypot(x - 1, y);
| ^~~~~
| std::hypot
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here
3708 | hypot(_Tp __x, _Up __y)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:142:13: error: '::asin' has not been declared
142 | r.r = ::asin(bet);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:142:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin'
2257 | asin(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin'
27 | VECTORIZED_MATH_1(asin,::asin)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:13: error: '::log' has not been declared
143 | r.i = ::log(alpha + ::sqrt(alpha*alpha - 1));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:13: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:27: error: '::sqrt' has not been declared
143 | r.i = ::log(alpha + ::sqrt(alpha*alpha - 1));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:27: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt'
36 | VECTORIZED_MATH_1(sqrt,::sqrt)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__atan(Rcomplex)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:170:19: error: '::atan' has not been declared
170 | r.r = 0.5 * ::atan(2 * x / ( 1 - x * x - y * y));
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:170:19: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan'
2301 | atan(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan'
28 | VECTORIZED_MATH_1(atan,::atan)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:171:20: error: '::log' has not been declared
171 | r.i = 0.25 * ::log((x * x + (y + 1) * (y + 1)) /
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:171:20: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log'
34 | VECTORIZED_MATH_1(log,::log)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:41:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/seq_along.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:48:37: error: 'size_t' does not name a type
48 | inline sugar::SeqLen seq_len( const size_t& n){
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:1:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
+++ |+#include <cstddef>
1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8 -*-
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:54:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h: In member function 'double Rcpp::sugar::Pow<RTYPE, NA, T, EXPONENT_TYPE>::operator[](R_xlen_t) const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:36:22: error: '::pow' has not been declared; did you mean 'std::pow'?
36 | return ::pow( object[i], op );
| ^~~
| std::pow
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' declared here
2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h: In member function 'double Rcpp::sugar::Pow<13, NA, T, EXPONENT_TYPE>::operator[](R_xlen_t) const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:52:53: error: '::pow' has not been declared; did you mean 'std::pow'?
52 | return x == NA_INTEGER ? NA_INTEGER : ::pow( x, op );
| ^~~
| std::pow
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' declared here
2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h: In member function 'double Rcpp::sugar::Pow<13, false, T, EXPONENT_TYPE>::operator[](R_xlen_t) const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:66:22: error: '::pow' has not been declared; did you mean 'std::pow'?
66 | return ::pow( object[i], op );
| ^~~
| std::pow
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' declared here
2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y)
| ^~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:65:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/sd.h: In member function 'Rcpp::sugar::Sd<RTYPE, NA, T>::STORAGE Rcpp::sugar::Sd<RTYPE, NA, T>::get() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/sd.h:37:22: error: '::sqrt' has not been declared
37 | return ::sqrt( var(object).get() ) ;
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/sd.h:37:22: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:246:21: note: 'Rcpp::sqrt'
246 | RCPP_SUGAR_COMPLEX( sqrt, Rcomplex )
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/dpq.h:25,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:25,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:79:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h: In function 'double Rcpp::stats::punif_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: error: '::log' has not been declared
36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:60:28: note: in expansion of macro 'R_D_val'
60 | if (lower_tail) return R_D_val(x);
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: note: suggested alternatives:
36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:60:28: note: in expansion of macro 'R_D_val'
60 | if (lower_tail) return R_D_val(x);
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: error: '::log' has not been declared
36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:61:17: note: in expansion of macro 'R_D_val'
61 | else return R_D_val(1-x);
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: note: suggested alternatives:
36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:61:17: note: in expansion of macro 'R_D_val'
61 | else return R_D_val(1-x);
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h: In function 'double Rcpp::stats::qunif_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: error: '::exp' has not been declared
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv'
76 | return a + R_DT_qIv(p) * (1.0 - a);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: note: suggested alternatives:
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv'
76 | return a + R_DT_qIv(p) * (1.0 - a);
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: error: '::expm1' has not been declared
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv'
76 | return a + R_DT_qIv(p) * (1.0 - a);
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: note: suggested alternatives:
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv'
76 | return a + R_DT_qIv(p) * (1.0 - a);
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h: In function 'double Rcpp::stats::qunif_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: error: '::exp' has not been declared
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv'
87 | return R_DT_qIv(p) ;
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: note: suggested alternatives:
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv'
87 | return R_DT_qIv(p) ;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: error: '::expm1' has not been declared
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv'
87 | return R_DT_qIv(p) ;
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: note: suggested alternatives:
52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv'
87 | return R_DT_qIv(p) ;
| ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:32:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h: In function 'double Rcpp::stats::dnorm_1(double, double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:39:30: error: '::exp' has not been declared
39 | M_1_SQRT_2PI * ::exp(-0.5 * x * x));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:39:30: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h: In function 'double Rcpp::stats::dnorm_0(double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:52:30: error: '::exp' has not been declared
52 | M_1_SQRT_2PI * ::exp(-0.5 * x * x));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:52:30: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:33:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/gamma.h: In function 'double Rcpp::stats::dgamma_1(double, double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/gamma.h:50:32: error: '::log' has not been declared
50 | return log_p ? pr + ::log(shape/x) : pr*shape/x;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/gamma.h:50:32: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:37:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::dlnorm_0(double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:40:11: error: '::log' has not been declared
40 | y = ::log(x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:40:11: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:42:47: error: '::log' has not been declared
42 | -(M_LN_SQRT_2PI + 0.5 * y * y + ::log(x)) :
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:42:47: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:43:30: error: '::exp' has not been declared
43 | M_1_SQRT_2PI * ::exp(-0.5 * y * y) / x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:43:30: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::dlnorm_1(double, double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:57:12: error: '::log' has not been declared
57 | y = (::log(x) - meanlog);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:57:12: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:59:47: error: '::log' has not been declared
59 | -(M_LN_SQRT_2PI + 0.5 * y * y + ::log(x)) :
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:59:47: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:60:30: error: '::exp' has not been declared
60 | M_1_SQRT_2PI * ::exp(-0.5 * y * y) / x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:60:30: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::plnorm_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:72:39: error: '::log' has not been declared
72 | return Rcpp::stats::pnorm_0(::log(x), lower_tail, log_p);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:72:39: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::plnorm_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:83:39: error: '::log' has not been declared
83 | return Rcpp::stats::pnorm_1(::log(x), meanlog, lower_tail, log_p);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:83:39: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::qlnorm_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:94:14: error: '::exp' has not been declared
94 | return ::exp(::Rf_qnorm5(p, 0.0, 1.0, lower_tail, log_p));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:94:14: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::qlnorm_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:104:14: error: '::exp' has not been declared
104 | return ::exp(::Rf_qnorm5(p, meanlog, 1.0, lower_tail, log_p));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:104:14: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:38:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h: In function 'double Rcpp::stats::dweibull_1(double, double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:42:14: error: '::pow' has not been declared
42 | tmp1 = ::pow(x, shape - 1);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:42:14: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow'
2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:79:45: note: 'Rcpp::pow'
79 | inline sugar::Pow<RTYPE,NA,T,EXPONENT_TYPE> pow(
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:46:19: error: '::log' has not been declared
46 | -tmp2 + ::log(shape * tmp1) :
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:46:19: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:47:26: error: '::exp' has not been declared
47 | shape * tmp1 * ::exp(-tmp2);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:47:26: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h: In function 'double Rcpp::stats::pweibull_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:58:12: error: '::pow' has not been declared
58 | x = -::pow(x , shape);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:58:12: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow'
2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:79:45: note: 'Rcpp::pow'
79 | inline sugar::Pow<RTYPE,NA,T,EXPONENT_TYPE> pow(
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:35: error: '::log' has not been declared
62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:35: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:42: error: '::expm1' has not been declared
62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:42: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:56: error: '::log1p' has not been declared
62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:56: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:65: error: '::exp' has not been declared
62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:65: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:63:22: error: '::expm1' has not been declared
63 | : -::expm1(x));
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:63:22: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: error: '::exp' has not been declared
38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:65:12: note: in expansion of macro 'R_D_exp'
65 | return R_D_exp(x);
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: note: suggested alternatives:
38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:65:12: note: in expansion of macro 'R_D_exp'
65 | return R_D_exp(x);
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h: In function 'double Rcpp::stats::qweibull_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:14: error: '::pow' has not been declared
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:14: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow'
2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y)
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:79:45: note: 'Rcpp::pow'
79 | inline sugar::Pow<RTYPE,NA,T,EXPONENT_TYPE> pow(
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: error: '::log' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: error: '::expm1' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: error: '::log1p' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: error: '::exp' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: error: '::log1p' has not been declared
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: note: suggested alternatives:
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: error: '::log' has not been declared
39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: note: suggested alternatives:
39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog'
76 | return ::pow(- R_DT_Clog(p), 1./shape);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:39:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::dlogis_0(double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:35:11: error: '::exp' has not been declared
35 | e = ::exp(-::fabs(x));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:35:11: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:35:18: error: '::fabs' has not been declared; did you mean 'std::fabs'?
35 | e = ::exp(-::fabs(x));
| ^~~~
| std::fabs
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:37:31: error: '::log' has not been declared
37 | return give_log ? -(x + ::log(f * f)) : e / (f * f);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:37:31: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::dlogis_1(double, double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:47:11: error: '::fabs' has not been declared; did you mean 'std::fabs'?
47 | x = ::fabs((x - location));
| ^~~~
| std::fabs
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here
2429 | fabs(const std::complex<_Tp>& __z)
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:48:11: error: '::exp' has not been declared
48 | e = ::exp(-x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:48:11: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:50:31: error: '::log' has not been declared
50 | return give_log ? -(x + ::log(f * f)) : e / (f * f);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:50:31: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::plogis_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:64:11: error: '::exp' has not been declared
64 | x = ::exp(lower_tail ? -x : x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:64:11: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:65:24: error: '::log1p' has not been declared
65 | return (log_p ? -::log1p(x) : 1 / (1 + x));
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:65:24: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::plogis_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:80:11: error: '::exp' has not been declared
80 | x = ::exp(lower_tail ? -x : x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:80:11: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:81:24: error: '::log1p' has not been declared
81 | return (log_p ? -::log1p(x) : 1 / (1 + x));
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:81:24: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::qlogis_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:23: error: '::log1p' has not been declared
95 | p = p - ::log1p(- ::exp(p));
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:23: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:33: error: '::exp' has not been declared
95 | p = p - ::log1p(- ::exp(p));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:33: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:19: error: '::log1p' has not been declared
97 | p = ::log1p(- ::exp(p)) - p;
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:19: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:29: error: '::exp' has not been declared
97 | p = ::log1p(- ::exp(p)) - p;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:29: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:100:15: error: '::log' has not been declared
100 | p = ::log(lower_tail ? (p / (1. - p)) : ((1. - p) / p));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:100:15: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::qlogis_1(double, double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:23: error: '::log1p' has not been declared
117 | p = p - ::log1p(- ::exp(p));
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:23: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:33: error: '::exp' has not been declared
117 | p = p - ::log1p(- ::exp(p));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:33: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:19: error: '::log1p' has not been declared
119 | p = ::log1p(- ::exp(p)) - p;
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:19: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:29: error: '::exp' has not been declared
119 | p = ::log1p(- ::exp(p)) - p;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:29: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:122:15: error: '::log' has not been declared
122 | p = ::log(lower_tail ? (p / (1. - p)) : ((1. - p) / p));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:122:15: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:41:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h: In function 'double Rcpp::stats::d_exp_0(double, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:39:32: error: '::exp' has not been declared
39 | return give_log ? (-x) : ::exp(-x);
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:39:32: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h: In function 'double Rcpp::stats::q_exp_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: error: '::log' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: error: '::expm1' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: error: '::log1p' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: error: '::exp' has not been declared
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: note: suggested alternatives:
43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp'
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: error: '::log1p' has not been declared
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: note: suggested alternatives:
46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: error: '::log' has not been declared
39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: note: suggested alternatives:
39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log'
63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog'
51 | return - R_DT_Clog(p);
| ^~~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h: In function 'double Rcpp::stats::p_exp_0(double, int, int)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:35: error: '::log' has not been declared
66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:35: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:42: error: '::expm1' has not been declared
66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:42: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:56: error: '::log1p' has not been declared
66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:56: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p'
2524 | log1p(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p'
51 | VECTORIZED_MATH_1(log1p , ::log1p )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:65: error: '::exp' has not been declared
66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x)))
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:65: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:67:22: error: '::expm1' has not been declared
67 | : -::expm1(x));
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:67:22: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1'
2383 | expm1(_Tp __x)
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1'
50 | VECTORIZED_MATH_1(expm1 , ::expm1 )
| ^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1'
94 | __NAME__( const VectorBase<INTSXP,NA,T>& t ){ \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: error: '::exp' has not been declared
38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:69:12: note: in expansion of macro 'R_D_exp'
69 | return R_D_exp(x);
| ^~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: note: suggested alternatives:
38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:69:12: note: in expansion of macro 'R_D_exp'
69 | return R_D_exp(x);
| ^~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:38,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:56:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h: In member function 'double Rcpp::stats::LNormGenerator::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:35:18: error: '::exp' has not been declared
35 | return ::exp( meanlog + sdlog * ::norm_rand() ) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:35:18: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h: In member function 'double Rcpp::stats::LNormGenerator_1::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:51:18: error: '::exp' has not been declared
51 | return ::exp( meanlog + ::norm_rand() ) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:51:18: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h: In member function 'double Rcpp::stats::LNormGenerator_0::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:65:18: error: '::exp' has not been declared
65 | return ::exp(::norm_rand() ) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:65:18: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:42:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rt.h: In member function 'double Rcpp::stats::TGenerator::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rt.h:41:24: error: '::sqrt' has not been declared
41 | return num / ::sqrt( ::Rf_rgamma(df_2, 2.0) / df);
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rt.h:41:24: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt'
1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); }
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:246:21: note: 'Rcpp::sqrt'
246 | RCPP_SUGAR_COMPLEX( sqrt, Rcomplex )
| ^~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:44:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h: In member function 'double Rcpp::stats::CauchyGenerator::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:35:37: error: '::tan' has not been declared
35 | return location + scale * ::tan(M_PI * unif_rand()) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:35:37: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:249:21: note: 'Rcpp::tan'
249 | RCPP_SUGAR_COMPLEX( tan, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h: In member function 'double Rcpp::stats::CauchyGenerator_1::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:49:29: error: '::tan' has not been declared
49 | return location + ::tan(M_PI * unif_rand()) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:49:29: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:249:21: note: 'Rcpp::tan'
249 | RCPP_SUGAR_COMPLEX( tan, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h: In member function 'double Rcpp::stats::CauchyGenerator_0::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:62:18: error: '::tan' has not been declared
62 | return ::tan(M_PI * unif_rand()) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:62:18: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan'
1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:249:21: note: 'Rcpp::tan'
249 | RCPP_SUGAR_COMPLEX( tan, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:50:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h: In member function 'double Rcpp::stats::WeibullGenerator::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:35:35: error: '::log' has not been declared
35 | return scale * ::R_pow(-::log(unif_rand()), shape_inv );
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:35:35: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h: In member function 'double Rcpp::stats::WeibullGenerator__scale1::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:49:27: error: '::log' has not been declared
49 | return ::R_pow(-::log(unif_rand()), shape_inv );
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:49:27: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:51:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h: In member function 'double Rcpp::stats::LogisGenerator::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:36:37: error: '::log' has not been declared
36 | return location + scale * ::log(u / (1. - u));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:36:37: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h: In member function 'double Rcpp::stats::LogisGenerator_1::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:53:29: error: '::log' has not been declared
53 | return location + ::log(u / (1. - u));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:53:29: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h: In member function 'double Rcpp::stats::LogisGenerator_0::operator()() const':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:68:18: error: '::log' has not been declared
68 | return ::log(u / (1. - u));
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:68:18: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log'
1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log'
245 | RCPP_SUGAR_COMPLEX( log, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h: In function 'Rcpp::NumericVector Rcpp::rlnorm(int, double, double)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:198:36: error: '::exp' has not been declared
198 | return NumericVector( n, ::exp( meanlog ) ) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:198:36: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h: In function 'Rcpp::NumericVector Rcpp::rlnorm(int, double)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:209:36: error: '::exp' has not been declared
209 | return NumericVector( n, ::exp( meanlog ) ) ;
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:209:36: note: suggested alternatives:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp'
1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); }
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp'
244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex )
| ^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX'
234 | __NAME__(const VectorBase<CPLXSXP,NA,T>& t) { \
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/meat.h:36,
from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:90:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:49:51: error: 'size_t' does not name a type
49 | void DottedPairImpl<CLASS>::insert( const size_t& index, const T& object) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:1:1: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
+++ |+#include <cstddef>
1 | // Copyright (C) 2013 Romain Francois
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: In member function 'void Rcpp::DottedPairImpl<CLASS>::insert(const int&, const T&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:67:25: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
67 | size_t i=1;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:69:32: error: 'i' was not declared in this scope
69 | while( i < index ){
| ^
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: At global scope:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:101:47: error: 'size_t' does not name a type
101 | void DottedPairImpl<CLASS>::remove( const size_t& index ) {
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:101:47: note: 'size_t' is defined in header '<cstddef>'; this is probably fixable by adding '#include <cstddef>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: In member function 'void Rcpp::DottedPairImpl<CLASS>::remove(const int&)':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:116:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
116 | size_t i=1;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:117:20: error: 'i' was not declared in this scope; did you mean 'is'?
117 | while( i<index ){ x = CDR(x) ; i++; }
| ^
| is
In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/meat.h:48:
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/module/Module.h: In member function 'Rcpp::List Rcpp::Module::classes_info()':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/module/Module.h:26:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'?
26 | size_t n = classes.size() ;
| ^~~~~~
| std::size_t
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here
310 | typedef __SIZE_TYPE__ size_t;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/module/Module.h:27:35: error: 'n' was not declared in this scope; did you mean 'in'?
27 | CharacterVector names(n) ;
| ^
| in
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/module/Module.h:31:24: error: expected ';' before 'i'
31 | for( size_t i=0; i<n; i++, ++it){
| ^~
| ;
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/module/Module.h:31:30: error: 'i' was not declared in this scope; did you mean 'is'?
31 | for( size_t i=0; i<n; i++, ++it){
| ^
| is
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In instantiation of 'Rcpp::String& Rcpp::String::append_wide_string(const T&) [with T = std::__cxx11::basic_string<wchar_t>]':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:348:85: required from here
348 | inline String& operator+=(const std::wstring& s) { return append_wide_string(s); }
| ~~~~~~~~~~~~~~~~~~^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: error: 'strlen' was not declared in this scope
336 | std::wstring tmp(buf, buf + strlen(buf));
| ~~~~~~^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: note: 'strlen' is defined in header '<cstring>'; this is probably fixable by adding '#include <cstring>'
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In instantiation of 'Rcpp::String& Rcpp::String::append_wide_string(const T&) [with T = const wchar_t*]':
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:349:80: required from here
349 | inline String& operator+=(const wchar_t* s) { return append_wide_string(s); }
| ~~~~~~~~~~~~~~~~~~^~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: error: 'strlen' was not declared in this scope
336 | std::wstring tmp(buf, buf + strlen(buf));
| ~~~~~~^~~~~
/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: note: 'strlen' is defined in header '<cstring>'; this is probably fixable by adding '#include <cstring>'
make: *** [/home/biocbuild/R/R-4.4.1/etc/Makeconf:204: RcppExports.o] Error 1
ERROR: compilation failed for package ‘pqsfinder’
* removing ‘/home/biocbuild/tmp/RtmpORpvLB/Rinst29917a9478897/pqsfinder’
-----------------------------------
ERROR: package installation failed