| Back to Multiple platform build/check report for BioC 3.20: simplified long | 
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This page was generated on 2025-04-02 19:36 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 | 
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 | 
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 | 
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 | 
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1501/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pareg 1.10.0  (landing page) Kim Philipp Jablonski 
 | nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| To the developers/maintainers of the pareg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. | 
| Package: pareg | 
| Version: 1.10.0 | 
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg | 
| StartedAt: 2025-04-01 01:27:33 -0000 (Tue, 01 Apr 2025) | 
| EndedAt: 2025-04-01 01:33:34 -0000 (Tue, 01 Apr 2025) | 
| EllapsedTime: 361.1 seconds | 
| RetCode: 1 | 
| Status: ERROR | 
| PackageFile: None | 
| PackageFileSize: NA | 
##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################
* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
Channels:
 - anaconda
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
  environment location: /home/biocbuild/.cache/R/basilisk/1.18.0/pareg/1.10.0/pareg
  added / updated specs:
    - python=3.10.14
The following NEW packages will be INSTALLED:
  _libgcc_mutex      anaconda/linux-aarch64::_libgcc_mutex-0.1-main 
  _openmp_mutex      anaconda/linux-aarch64::_openmp_mutex-5.1-51_gnu 
  bzip2              anaconda/linux-aarch64::bzip2-1.0.8-h998d150_6 
  ca-certificates    anaconda/linux-aarch64::ca-certificates-2025.2.25-hd43f75c_0 
  ld_impl_linux-aar~ anaconda/linux-aarch64::ld_impl_linux-aarch64-2.40-h48e3ba3_0 
  libffi             anaconda/linux-aarch64::libffi-3.4.4-h419075a_1 
  libgcc-ng          anaconda/linux-aarch64::libgcc-ng-11.2.0-h1234567_1 
  libgomp            anaconda/linux-aarch64::libgomp-11.2.0-h1234567_1 
  libstdcxx-ng       anaconda/linux-aarch64::libstdcxx-ng-11.2.0-h1234567_1 
  libuuid            anaconda/linux-aarch64::libuuid-1.41.5-h998d150_0 
  ncurses            anaconda/linux-aarch64::ncurses-6.4-h419075a_0 
  openssl            anaconda/linux-aarch64::openssl-3.0.16-h998d150_0 
  pip                anaconda/linux-aarch64::pip-25.0-py310hd43f75c_0 
  python             anaconda/linux-aarch64::python-3.10.14-h4bb2201_1 
  readline           anaconda/linux-aarch64::readline-8.2-h998d150_0 
  setuptools         anaconda/linux-aarch64::setuptools-75.8.0-py310hd43f75c_0 
  sqlite             anaconda/linux-aarch64::sqlite-3.45.3-h998d150_0 
  tk                 anaconda/linux-aarch64::tk-8.6.14-h987d8db_0 
  tzdata             anaconda/noarch::tzdata-2025a-h04d1e81_0 
  wheel              anaconda/linux-aarch64::wheel-0.45.1-py310hd43f75c_0 
  xz                 anaconda/linux-aarch64::xz-5.6.4-h998d150_1 
  zlib               anaconda/linux-aarch64::zlib-1.2.13-h998d150_1 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - anaconda
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
Channels:
 - anaconda
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
LibMambaUnsatisfiableError: Encountered problems while solving:
  - package tensorflow-base-2.10.0-eigen_py37ha372be2_0 requires python >=3.7,<3.8.0a0, but none of the providers can be installed
Could not solve for environment specs
The following packages are incompatible
├─ python 3.10.14**  is installable and it requires
│  └─ openssl >=3.0.13,<4.0a0 , which can be installed;
└─ tensorflow 2.10.0**  is not installable because there are no viable options
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base [2.10.0 eigen_py37ha372be2_0|2.10.0 mkl_py37hfdbf31d_0], which requires
   │     └─ python >=3.7,<3.8.0a0 , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base [2.10.0 eigen_py310ha372be2_0|2.10.0 mkl_py310hfdbf31d_0], which requires
   │     └─ openssl >=1.1.1s,<1.1.2a , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base [2.10.0 eigen_py38ha372be2_0|2.10.0 mkl_py38hfdbf31d_0], which requires
   │     └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
   └─ tensorflow 2.10.0 would require
      └─ tensorflow-base [2.10.0 eigen_py39ha372be2_0|2.10.0 mkl_py39hfdbf31d_0], which requires
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.
Quitting from pareg.Rmd:144-150 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! one or more Python packages failed to install [error code 1]
---
Backtrace:
    ▆
 1. └─pareg::pareg(...)
 2.   └─basilisk::basiliskStart(...)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::conda_install(...)
 6.           └─reticulate:::stopf(fmt, result)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’
--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’
SUMMARY: processing the following file failed:
  ‘pareg.Rmd’
Error: Vignette re-building failed.
Execution halted