Multiple platform build/check report for BioC 3.20 - CHECK results for oligoClasses on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for oligoClasses on kjohnson1

To the developers/maintainers of the oligoClasses package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/oligoClasses.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: oligoClasses

Version: 1.68.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:oligoClasses.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings oligoClasses_1.68.0.tar.gz

StartedAt: 2025-04-02 03:05:07 -0400 (Wed, 02 Apr 2025)

EndedAt: 2025-04-02 03:05:11 -0400 (Wed, 02 Apr 2025)

EllapsedTime: 3.3 seconds

RetCode: 1

Status: ERROR

CheckDir: oligoClasses.Rcheck

Warnings: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:oligoClasses.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings oligoClasses_1.68.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/oligoClasses.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘oligoClasses/DESCRIPTION’ ... OK
* this is package ‘oligoClasses’ version ‘1.68.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages suggested but not available:
  'pd.genomewidesnp.6', 'pd.genomewidesnp.5', 'pd.mapping50k.hind240',
  'pd.mapping50k.xba240', 'pd.mapping250k.sty', 'pd.mapping250k.nsp'

Packages which this enhances but not available for checking:
  'doMPI', 'doRedis'

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/oligoClasses.Rcheck/00check.log’
for details.

CHECK results for oligoClasses on kjohnson1

Summary

Command output

Installation output

Tests output

Example timings