Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-03-10 12:12 -0400 (Mon, 10 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4670 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4355 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4446 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4439 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4306 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1296/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mobileRNA 1.2.0 (landing page) Katie Jeynes-Cupper
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: mobileRNA |
Version: 1.2.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.2.0.tar.gz |
StartedAt: 2025-03-07 08:36:07 -0000 (Fri, 07 Mar 2025) |
EndedAt: 2025-03-07 08:42:08 -0000 (Fri, 07 Mar 2025) |
EllapsedTime: 360.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mobileRNA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/mobileRNA.Rcheck’ * using R version 4.4.3 (2025-02-28) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mobileRNA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mobileRNA’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mobileRNA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed RNAdistribution 17.485 0.028 17.548 RNAdicercall 16.708 0.148 16.901 RNAsubset 16.334 0.040 16.409 RNAdifferentialAnalysis 9.569 0.035 9.624 RNAsummary 6.877 0.076 6.965 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’ * installing *source* package ‘mobileRNA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
name | user | system | elapsed | |
RNAattributes | 1.418 | 0.008 | 1.430 | |
RNAdf2se | 0.315 | 0.000 | 0.315 | |
RNAdicercall | 16.708 | 0.148 | 16.901 | |
RNAdifferentialAnalysis | 9.569 | 0.035 | 9.624 | |
RNAdistribution | 17.485 | 0.028 | 17.548 | |
RNAfeatures | 1.634 | 0.016 | 1.653 | |
RNAimport | 0.001 | 0.000 | 0.000 | |
RNAmergeAnnotations | 0.386 | 0.000 | 0.389 | |
RNAmergeGenomes | 0.063 | 0.000 | 0.069 | |
RNAmobile | 0.933 | 0.008 | 0.942 | |
RNApopulation | 3.248 | 0.000 | 3.253 | |
RNAreorder | 0.178 | 0.000 | 0.178 | |
RNAsequences | 2.105 | 0.008 | 2.117 | |
RNAsubset | 16.334 | 0.040 | 16.409 | |
RNAsummary | 6.877 | 0.076 | 6.965 | |
mRNA_data | 0.034 | 0.004 | 0.039 | |
mapRNA | 0.000 | 0.000 | 0.001 | |
plotHeatmap | 0.998 | 0.007 | 1.007 | |
plotRNAfeatures | 1.492 | 0.000 | 1.495 | |
plotSampleDistance | 3.694 | 0.032 | 3.733 | |
plotSamplePCA | 4.240 | 0.004 | 4.252 | |
sRNA_data | 0.155 | 0.000 | 0.156 | |