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###
### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony
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* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* preparing ‘lpsymphony’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘lpsymphony’ ...
** using staged installation
Running on Linux
CXX is g++ -std=gnu++17
CXX is g++ -std=gnu++14
checking build system type... aarch64-unknown-linux-gnu
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2  
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2  
configure: Trying to determine Fortran compiler name
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking for egrep... grep -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking dependency style of g++ -std=gnu++17... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking host system type... aarch64-unknown-linux-gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld
checking if the linker (/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld) is GNU ld... yes
checking for /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... g++ -std=gnu++17 -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++ -std=gnu++17... /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld
checking if the linker (/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld) is GNU ld... yes
checking whether the g++ -std=gnu++17 linker (/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld) supports shared libraries... yes
checking for g++ -std=gnu++17 option to produce PIC... -fPIC
checking if g++ -std=gnu++17 PIC flag -fPIC works... yes
checking if g++ -std=gnu++17 static flag -static works... yes
checking if g++ -std=gnu++17 supports -c -o file.o... yes
checking whether the g++ -std=gnu++17 linker (/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/home/biocbuild/miniforge3/aarch64-conda-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: Build is "aarch64-unknown-linux-gnu".
checking if library version is set... no
checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
checking whether source of project Sample is available and should be compiled... no
checking whether source of project miblib3 is available and should be compiled... no
checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
checking whether source of project Osi is available and should be compiled... yes, source in Osi
checking whether source of project Clp is available and should be compiled... yes, source in Clp
checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
checking whether source of project DyLP is available and should be compiled... no
checking whether source of project Vol is available and should be compiled... no
checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
checking whether Clp is required... yes
checking which command should be used to link input files... ln -s
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
configure: configuring in CoinUtils
configure: running /bin/sh './configure' --prefix=/home/biocbuild/tmp/Rtmp5G5UN4/Rbuild24ddb05c6eed5/lpsymphony/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'F77=gfortran' 'FLIBS=-L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm' 'CPPFLAGS=-I/usr/local/include' 'LDFLAGS=-L/usr/local/lib' --cache-file=/dev/null --srcdir=.
checking build system type... aarch64-unknown-linux-gnu
checking for svnversion... no
checking whether we want to compile in debug mode... no
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
configure: C compiler options are: -w -g -O2   -DCOINUTILS_BUILD
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking whether C++ compiler g++ -std=gnu++17 works... yes
configure: C++ compiler options are: -w -g -O2   -DCOINUTILS_BUILD
configure: Trying to determine Fortran compiler name
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
configure: Fortran compiler options are: -O3 -pipe  
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm
checking for dummy main to link with Fortran libraries... unknown
configure: error: linking to Fortran libraries from C fails
See `config.log' for more details.
configure: error: /bin/sh './configure' failed for CoinUtils
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/biocbuild/tmp/Rtmp5G5UN4/Rbuild24ddb05c6eed5/lpsymphony/src/SYMPHONY'
Making all in CoinUtils
make[2]: Entering directory '/home/biocbuild/tmp/Rtmp5G5UN4/Rbuild24ddb05c6eed5/lpsymphony/src/SYMPHONY/CoinUtils'
make[2]: *** No rule to make target 'all'.  Stop.
make[2]: Leaving directory '/home/biocbuild/tmp/Rtmp5G5UN4/Rbuild24ddb05c6eed5/lpsymphony/src/SYMPHONY/CoinUtils'
make[1]: *** [Makefile:324: all-recursive] Error 1
make[1]: Leaving directory '/home/biocbuild/tmp/Rtmp5G5UN4/Rbuild24ddb05c6eed5/lpsymphony/src/SYMPHONY'
make: *** [Makevars:14: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’
* removing ‘/home/biocbuild/tmp/Rtmp5G5UN4/Rinst24ddb0431221b3/lpsymphony’
      -----------------------------------
ERROR: package installation failed