Till Soerensen
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_20 |
| git_last_commit: c4a056b |
| git_last_commit_date: 2024-10-29 09:59:09 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:35 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1021/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.38.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.38.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-04-01 00:16:57 -0000 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 00:20:17 -0000 (Tue, 01 Apr 2025) |
| EllapsedTime: 200.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=151<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=0<>26
Model Refinement takes 0.05 mins(max 1: 0.05)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=80) has 2 sub-cluster at 2 (8), ICL=121<>30
split 2 into 2 clusters
cluster 1(N=225) has 2 sub-cluster at 2 (8), ICL=21<>30
cluster 1(N=225) has 2 sub-cluster at 2 (8), ICL=0<>30
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 6 iterations
cluster 1(N=435) has 2 sub-cluster at 2 (16), ICL=72<>34
split 1 into 2 clusters
cluster 2(N=100) has 2 sub-cluster at 2 (8), ICL=54<>34
split 2 into 2 clusters
cluster 3(N=72) has 2 sub-cluster at 2 (7), ICL=20<>34
cluster 1(N=435) has 2 sub-cluster at 2 (16), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=3->5 N=1210
EM 5 takes 0 mins, 11 iterations
cluster 2(N=134) has 2 sub-cluster at 2 (7), ICL=94<>37
split 2 into 2 clusters
cluster 5(N=110) has 2 sub-cluster at 2 (11), ICL=27<>37
cluster 3(N=130) has 2 sub-cluster at 2 (8), ICL=20<>37
cluster 4(N=55) has 2 sub-cluster at 2 (11), ICL=6.2<>37
cluster 2(N=134) has 2 sub-cluster at 2 (7), ICL=0<>37
Model Refinement takes 0.083 mins(max 2: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 6 iterations
cluster 2(N=118) has 2 sub-cluster at 2 (9), ICL=55<>41
split 2 into 2 clusters
cluster 4(N=289) has 2 sub-cluster at 2 (7), ICL=28<>41
cluster 6(N=220) has 3 sub-cluster at 3 (33), ICL=25<>41
cluster 5(N=95) has 5 sub-cluster at 6 (31), ICL=21<>41
cluster 3(N=153) has 8 sub-cluster at 8 (21), ICL=18<>41
cluster 2(N=118) has 2 sub-cluster at 2 (9), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->7 N=4841
EM 7 takes 0 mins, 6 iterations
cluster 7(N=479) has 2 sub-cluster at 2 (5), ICL=108<>45
split 7 into 2 clusters
cluster 3(N=116) has 2 sub-cluster at 2 (6), ICL=68<>45
split 3 into 2 clusters
cluster 2(N=167) has 2 sub-cluster at 2 (67), ICL=56<>45
split 2 into 2 clusters
cluster 5(N=561) has 2 sub-cluster at 2 (7), ICL=41<>45
cluster 4(N=265) has 5 sub-cluster at 5 (27), ICL=28<>45
cluster 6(N=186) has 3 sub-cluster at 3 (8), ICL=18<>45
cluster 2(N=167) has 2 sub-cluster at 2 (67), ICL=0<>45
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=7->10 N=9682
EM 9 takes 0.017 mins, 8 iterations
cluster 5(N=557) has 3 sub-cluster at 3 (11), ICL=65<>48
split 5 into 3 clusters
cluster 6(N=1121) has 2 sub-cluster at 2 (9), ICL=49<>48
split 6 into 2 clusters
cluster 3(N=153) has 4 sub-cluster at 4 (17), ICL=42<>48
cluster 7(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 9(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 8(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 4(N=76) has 5 sub-cluster at 6 (94), ICL=13<>48
cluster 2(N=314) has 2 sub-cluster at 2 (9), ICL=7.4<>48
cluster 2(N=314) has 2 sub-cluster at 2 (9), ICL=0<>48
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->12 N=9682
EM 12 takes 0.017 mins, 7 iterations
cluster 10(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 12(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 11(N=898) has 3 sub-cluster at 3 (9), ICL=29<>48
cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 9(N=425) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 7(N=88) has 2 sub-cluster at 2 (7), ICL=18<>48
cluster 5(N=362) has 2 sub-cluster at 2 (7), ICL=12<>48
cluster 6(N=173) has 4 sub-cluster at 5 (21), ICL=11<>48
cluster 2(N=309) has 2 sub-cluster at 2 (10), ICL=7.5<>48
cluster 4(N=75) has 3 sub-cluster at 4 (12), ICL=4.1<>48
cluster 2(N=309) has 2 sub-cluster at 2 (10), ICL=0<>48
Model Refinement takes 0.27 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=168<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=77) has 3 sub-cluster at 3 (9), ICL=98<>25
split 2 into 3 clusters
cluster 1(N=225) has 2 sub-cluster at 2 (7), ICL=37<>25
split 1 into 2 clusters
cluster 1(N=225) has 2 sub-cluster at 2 (7), ICL=0<>25
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 10 iterations
cluster 2(N=78) has 2 sub-cluster at 2 (13), ICL=45<>28
split 2 into 2 clusters
cluster 5(N=63) has 5 sub-cluster at 6 (56), ICL=21<>28
cluster 3(N=55) has 2 sub-cluster at 2 (8), ICL=13<>28
cluster 4(N=30) has 3 sub-cluster at 3 (6), ICL=4.4<>28
cluster 2(N=78) has 2 sub-cluster at 2 (13), ICL=0<>28
Model Refinement takes 0.033 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0.017 mins, 11 iterations
cluster 4(N=103) has 2 sub-cluster at 2 (5), ICL=38<>31
split 4 into 2 clusters
cluster 2(N=60) has 2 sub-cluster at 2 (6), ICL=33<>31
split 2 into 2 clusters
cluster 6(N=148) has 4 sub-cluster at 5 (26), ICL=19<>31
cluster 5(N=47) has 2 sub-cluster at 2 (100), ICL=18<>31
cluster 3(N=72) has 2 sub-cluster at 2 (84), ICL=2.6<>31
cluster 2(N=60) has 2 sub-cluster at 2 (6), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=6->8 N=2420
EM 8 takes 0 mins, 9 iterations
cluster 2(N=43) has 2 sub-cluster at 2 (8), ICL=32<>34
cluster 8(N=266) has 2 sub-cluster at 2 (12), ICL=29<>34
cluster 4(N=150) has 2 sub-cluster at 2 (8), ICL=21<>34
cluster 7(N=95) has 3 sub-cluster at 3 (20), ICL=20<>34
cluster 5(N=228) has 2 sub-cluster at 2 (13), ICL=19<>34
cluster 3(N=76) has 4 sub-cluster at 5 (21), ICL=17<>34
cluster 6(N=17) has 2 sub-cluster at 2 (100), ICL=4<>34
cluster 2(N=43) has 2 sub-cluster at 2 (8), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=8->8 N=4841
EM 8 takes 0 mins, 6 iterations
cluster 2(N=99) has 2 sub-cluster at 2 (6), ICL=64<>37
split 2 into 2 clusters
cluster 8(N=593) has 2 sub-cluster at 2 (7), ICL=38<>37
split 8 into 2 clusters
cluster 4(N=262) has 3 sub-cluster at 3 (18), ICL=35<>37
cluster 7(N=187) has 7 sub-cluster at 7 (50), ICL=25<>37
cluster 3(N=135) has 6 sub-cluster at 6 (21), ICL=9.3<>37
cluster 5(N=465) has 8 sub-cluster at 8 (28), ICL=8.5<>37
cluster 2(N=99) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.17 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=8->10 N=9682
EM 10 takes 0 mins, 6 iterations
cluster 5(N=557) has 3 sub-cluster at 3 (11), ICL=69<>40
split 5 into 3 clusters
cluster 8(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 8 into 2 clusters
cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40
cluster 6(N=909) has 4 sub-cluster at 4 (15), ICL=27<>40
cluster 10(N=380) has 2 sub-cluster at 3 (13), ICL=19<>40
cluster 2(N=76) has 4 sub-cluster at 5 (15), ICL=14<>40
cluster 4(N=314) has 2 sub-cluster at 2 (6), ICL=7.9<>40
cluster 2(N=76) has 4 sub-cluster at 5 (15), ICL=0<>40
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=10->13 N=9682
EM 13 takes 0.017 mins, 4 iterations
cluster 8(N=898) has 2 sub-cluster at 2 (34), ICL=57<>40
split 8 into 2 clusters
cluster 3(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 9(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 10(N=221) has 6 sub-cluster at 7 (98), ICL=23<>40
cluster 7(N=87) has 3 sub-cluster at 3 (10), ICL=20<>40
cluster 13(N=389) has 2 sub-cluster at 2 (10), ICL=18<>40
cluster 5(N=363) has 7 sub-cluster at 7 (30), ICL=16<>40
cluster 11(N=217) has 7 sub-cluster at 8 (20), ICL=12<>40
cluster 6(N=181) has 6 sub-cluster at 8 (26), ICL=11<>40
cluster 4(N=307) has 2 sub-cluster at 2 (7), ICL=9<>40
cluster 2(N=75) has 3 sub-cluster at 4 (10), ICL=6.6<>40
cluster 2(N=75) has 3 sub-cluster at 4 (10), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=13->14 N=9682
EM 14 takes 0.017 mins, 3 iterations
cluster 10(N=61) has 2 sub-cluster at 2 (9), ICL=33<>40
cluster 3(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 14(N=395) has 3 sub-cluster at 4 (34), ICL=25<>40
cluster 7(N=86) has 5 sub-cluster at 5 (26), ICL=20<>40
cluster 11(N=221) has 6 sub-cluster at 8 (49), ICL=17<>40
cluster 5(N=363) has 8 sub-cluster at 8 (28), ICL=17<>40
cluster 6(N=173) has 4 sub-cluster at 5 (18), ICL=14<>40
cluster 12(N=220) has 6 sub-cluster at 7 (38), ICL=13<>40
cluster 4(N=308) has 2 sub-cluster at 2 (7), ICL=9.1<>40
cluster 2(N=75) has 3 sub-cluster at 4 (10), ICL=6.6<>40
cluster 8(N=399) has 6 sub-cluster at 7 (42), ICL=1.2<>40
cluster 2(N=75) has 3 sub-cluster at 4 (10), ICL=0<>40
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=14->14 N=9682
EM 14 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted