Till Soerensen
| Snapshot Date: 2025-01-27 13:00 -0500 (Mon, 27 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_20 |
| git_last_commit: c4a056b |
| git_last_commit_date: 2024-10-29 09:59:09 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-30 12:11 -0500 (Thu, 30 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4400 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1021/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.38.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.38.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-01-28 01:02:12 -0000 (Tue, 28 Jan 2025) |
| EndedAt: 2025-01-28 01:05:52 -0000 (Tue, 28 Jan 2025) |
| EllapsedTime: 220.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=152<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=85) has 2 sub-cluster at 2 (6), ICL=122<>30
split 2 into 2 clusters
cluster 1(N=218) has 2 sub-cluster at 2 (9), ICL=17<>30
cluster 1(N=218) has 2 sub-cluster at 2 (9), ICL=0<>30
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 19 iterations
cluster 2(N=126) has 2 sub-cluster at 2 (7), ICL=89<>34
split 2 into 2 clusters
cluster 3(N=70) has 2 sub-cluster at 2 (7), ICL=54<>34
split 3 into 2 clusters
cluster 1(N=410) has 3 sub-cluster at 3 (12), ICL=22<>34
cluster 1(N=410) has 3 sub-cluster at 3 (12), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=3->5 N=1210
EM 5 takes 0 mins, 10 iterations
cluster 2(N=117) has 2 sub-cluster at 2 (8), ICL=63<>37
split 2 into 2 clusters
cluster 3(N=123) has 8 sub-cluster at 8 (45), ICL=18<>37
cluster 1(N=853) has 2 sub-cluster at 2 (6), ICL=18<>37
cluster 5(N=25) has 3 sub-cluster at 3 (8), ICL=17<>37
cluster 4(N=97) has 7 sub-cluster at 7 (30), ICL=10<>37
cluster 1(N=853) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 9 iterations
cluster 6(N=61) has 2 sub-cluster at 2 (18), ICL=37<>41
cluster 3(N=107) has 4 sub-cluster at 4 (28), ICL=20<>41
cluster 4(N=281) has 2 sub-cluster at 2 (6), ICL=19<>41
cluster 5(N=232) has 5 sub-cluster at 5 (35), ICL=14<>41
cluster 2(N=135) has 7 sub-cluster at 8 (25), ICL=13<>41
cluster 2(N=135) has 7 sub-cluster at 8 (25), ICL=0<>41
Model Refinement takes 0.17 mins(max 1: 0.067)
Fit Model 5 of (6/10) K=6->6 N=4841
EM 6 takes 0 mins, 9 iterations
cluster 6(N=131) has 3 sub-cluster at 3 (6), ICL=83<>45
split 6 into 3 clusters
cluster 4(N=546) has 2 sub-cluster at 2 (5), ICL=45<>45
split 4 into 2 clusters
cluster 2(N=282) has 3 sub-cluster at 3 (10), ICL=35<>45
cluster 1(N=3278) has 3 sub-cluster at 3 (7), ICL=32<>45
cluster 3(N=195) has 8 sub-cluster at 8 (39), ICL=24<>45
cluster 5(N=444) has 7 sub-cluster at 8 (27), ICL=11<>45
cluster 1(N=3278) has 3 sub-cluster at 3 (7), ICL=0<>45
Model Refinement takes 0.2 mins(max 1: 0.1)
Fit Model 6 of (6/10) K=6->9 N=9682
EM 9 takes 0 mins, 8 iterations
cluster 1(N=6478) has 3 sub-cluster at 3 (10), ICL=76<>48
split 1 into 3 clusters
cluster 9(N=71) has 2 sub-cluster at 2 (10), ICL=69<>48
split 9 into 2 clusters
cluster 2(N=557) has 3 sub-cluster at 3 (8), ICL=63<>48
split 2 into 3 clusters
cluster 3(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 6(N=911) has 3 sub-cluster at 3 (10), ICL=22<>48
cluster 5(N=390) has 5 sub-cluster at 5 (38), ICL=15<>48
cluster 7(N=111) has 4 sub-cluster at 5 (26), ICL=11<>48
cluster 8(N=75) has 3 sub-cluster at 4 (12), ICL=5<>48
cluster 1(N=6478) has 3 sub-cluster at 3 (10), ICL=0<>48
Model Refinement takes 0.25 mins(max 1: 0.083)
Fit Model 7 of (6/10) K=9->14 N=9682
EM 14 takes 0.017 mins, 15 iterations
cluster 7(N=390) has 2 sub-cluster at 2 (6), ICL=39<>48
cluster 10(N=896) has 3 sub-cluster at 3 (19), ICL=26<>48
cluster 12(N=74) has 7 sub-cluster at 8 (48), ICL=24<>48
cluster 6(N=89) has 4 sub-cluster at 4 (38), ICL=22<>48
cluster 14(N=25) has 2 sub-cluster at 2 (9), ICL=21<>48
cluster 9(N=397) has 2 sub-cluster at 2 (7), ICL=19<>48
cluster 4(N=369) has 7 sub-cluster at 7 (22), ICL=16<>48
cluster 11(N=111) has 4 sub-cluster at 4 (31), ICL=12<>48
cluster 5(N=172) has 5 sub-cluster at 7 (35), ICL=7.6<>48
cluster 3(N=312) has 2 sub-cluster at 2 (16), ICL=3.9<>48
cluster 3(N=312) has 2 sub-cluster at 2 (16), ICL=0<>48
Model Refinement takes 0.33 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.2 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=171<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0 mins(max 1: 0)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=95) has 3 sub-cluster at 3 (11), ICL=116<>25
split 2 into 3 clusters
cluster 1(N=207) has 2 sub-cluster at 2 (12), ICL=49<>25
split 1 into 2 clusters
cluster 1(N=207) has 2 sub-cluster at 2 (12), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 10 iterations
cluster 5(N=50) has 2 sub-cluster at 2 (8), ICL=31<>28
split 5 into 2 clusters
cluster 3(N=51) has 3 sub-cluster at 3 (18), ICL=21<>28
cluster 2(N=38) has 2 sub-cluster at 2 (9), ICL=19<>28
cluster 4(N=84) has 4 sub-cluster at 5 (20), ICL=17<>28
cluster 1(N=391) has 8 sub-cluster at 8 (30), ICL=8.9<>28
cluster 1(N=391) has 8 sub-cluster at 8 (30), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0.017 mins, 13 iterations
cluster 4(N=151) has 3 sub-cluster at 3 (24), ICL=22<>31
cluster 2(N=35) has 2 sub-cluster at 2 (5), ICL=19<>31
cluster 5(N=85) has 3 sub-cluster at 3 (7), ICL=18<>31
cluster 3(N=106) has 3 sub-cluster at 3 (24), ICL=16<>31
cluster 6(N=50) has 3 sub-cluster at 3 (27), ICL=16<>31
cluster 2(N=35) has 2 sub-cluster at 2 (5), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0 mins, 10 iterations
cluster 2(N=63) has 4 sub-cluster at 4 (9), ICL=52<>34
split 2 into 4 clusters
cluster 5(N=128) has 7 sub-cluster at 7 (33), ICL=38<>34
split 5 into 7 clusters
cluster 4(N=284) has 2 sub-cluster at 2 (5), ICL=27<>34
cluster 6(N=108) has 7 sub-cluster at 7 (29), ICL=22<>34
cluster 3(N=228) has 8 sub-cluster at 8 (27), ICL=14<>34
cluster 1(N=1617) has 4 sub-cluster at 4 (6), ICL=0.59<>34
cluster 1(N=1617) has 4 sub-cluster at 4 (6), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->15 N=4841
EM 13 takes 0.017 mins, 15 iterations
cluster 1(N=3193) has 3 sub-cluster at 3 (6), ICL=27<>37
cluster 7(N=552) has 2 sub-cluster at 2 (15), ICL=22<>37
cluster 13(N=213) has 3 sub-cluster at 3 (19), ICL=21<>37
cluster 4(N=61) has 3 sub-cluster at 3 (14), ICL=20<>37
cluster 6(N=480) has 4 sub-cluster at 4 (21), ICL=20<>37
cluster 8(N=106) has 7 sub-cluster at 8 (31), ICL=18<>37
cluster 9(N=57) has 3 sub-cluster at 3 (11), ICL=17<>37
cluster 10(N=87) has 4 sub-cluster at 4 (33), ICL=15<>37
cluster 3(N=21) has 2 sub-cluster at 2 (100), ICL=13<>37
cluster 11(N=23) has 2 sub-cluster at 2 (5), ICL=13<>37
cluster 12(N=69) has 2 sub-cluster at 2 (10), ICL=8.5<>37
cluster 1(N=3193) has 3 sub-cluster at 3 (6), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=13->13 N=9682
EM 13 takes 0.05 mins, 31 iterations
cluster 2(N=370) has 2 sub-cluster at 2 (5), ICL=135<>40
split 2 into 2 clusters
cluster 4(N=143) has 2 sub-cluster at 2 (17), ICL=50<>40
split 4 into 2 clusters
cluster 13(N=388) has 2 sub-cluster at 2 (12), ICL=43<>40
split 13 into 2 clusters
cluster 7(N=1117) has 2 sub-cluster at 2 (10), ICL=39<>40
cluster 5(N=51) has 2 sub-cluster at 2 (100), ICL=39<>40
cluster 6(N=915) has 3 sub-cluster at 3 (8), ICL=38<>40
cluster 10(N=256) has 6 sub-cluster at 6 (20), ICL=24<>40
cluster 12(N=177) has 5 sub-cluster at 5 (44), ICL=17<>40
cluster 11(N=46) has 3 sub-cluster at 3 (42), ICL=8.7<>40
cluster 2(N=370) has 2 sub-cluster at 2 (5), ICL=0<>40
Model Refinement takes 0.32 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=13->16 N=9682
EM 16 takes 0.033 mins, 21 iterations
cluster 8(N=915) has 3 sub-cluster at 3 (14), ICL=55<>40
split 8 into 3 clusters
cluster 7(N=51) has 2 sub-cluster at 2 (100), ICL=44<>40
split 7 into 2 clusters
cluster 12(N=261) has 3 sub-cluster at 3 (22), ICL=19<>40
cluster 15(N=212) has 3 sub-cluster at 4 (29), ICL=18<>40
cluster 13(N=47) has 3 sub-cluster at 4 (21), ICL=16<>40
cluster 14(N=175) has 4 sub-cluster at 5 (39), ICL=16<>40
cluster 2(N=310) has 7 sub-cluster at 7 (77), ICL=15<>40
cluster 6(N=109) has 3 sub-cluster at 3 (23), ICL=15<>40
cluster 11(N=207) has 3 sub-cluster at 4 (40), ICL=14<>40
cluster 5(N=280) has 7 sub-cluster at 8 (27), ICL=12<>40
cluster 16(N=235) has 6 sub-cluster at 8 (29), ICL=8.5<>40
cluster 3(N=72) has 2 sub-cluster at 4 (9), ICL=7.2<>40
cluster 4(N=16) has 2 sub-cluster at 2 (100), ICL=0.77<>40
cluster 2(N=310) has 7 sub-cluster at 7 (77), ICL=0<>40
Model Refinement takes 0.35 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->19 N=9682
EM 18 takes 0.017 mins, 5 iterations
cluster 15(N=50) has 4 sub-cluster at 5 (80), ICL=26<>40
cluster 17(N=206) has 8 sub-cluster at 8 (56), ICL=23<>40
cluster 10(N=151) has 6 sub-cluster at 6 (49), ICL=22<>40
cluster 7(N=52) has 3 sub-cluster at 3 (21), ICL=17<>40
cluster 6(N=110) has 3 sub-cluster at 4 (28), ICL=17<>40
cluster 18(N=238) has 5 sub-cluster at 7 (45), ICL=16<>40
cluster 14(N=263) has 6 sub-cluster at 6 (42), ICL=16<>40
cluster 5(N=317) has 6 sub-cluster at 8 (44), ICL=14<>40
cluster 16(N=174) has 5 sub-cluster at 7 (31), ICL=13<>40
cluster 2(N=312) has 2 sub-cluster at 2 (11), ICL=11<>40
cluster 8(N=408) has 2 sub-cluster at 2 (11), ICL=8.2<>40
cluster 3(N=72) has 2 sub-cluster at 4 (9), ICL=7.2<>40
cluster 13(N=202) has 4 sub-cluster at 5 (40), ICL=5.6<>40
cluster 4(N=16) has 2 sub-cluster at 2 (100), ICL=0.78<>40
cluster 2(N=312) has 2 sub-cluster at 2 (11), ICL=0<>40
Model Refinement takes 0.4 mins(max 12: 0.067)
Fit Model 9 of (6/10) K=18->18 N=9682
EM 18 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.7 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted