Till Soerensen
| Snapshot Date: 2025-03-06 13:00 -0500 (Thu, 06 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_20 |
| git_last_commit: c4a056b |
| git_last_commit_date: 2024-10-29 09:59:09 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-10 12:12 -0400 (Mon, 10 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4670 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4355 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4446 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4439 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4306 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1021/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.38.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.38.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-03-07 01:59:18 -0000 (Fri, 07 Mar 2025) |
| EndedAt: 2025-03-07 02:02:40 -0000 (Fri, 07 Mar 2025) |
| EllapsedTime: 202.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=125<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=86) has 3 sub-cluster at 3 (6), ICL=102<>30
split 2 into 3 clusters
cluster 1(N=218) has 7 sub-cluster at 7 (72), ICL=32<>30
split 1 into 7 clusters
Model Refinement takes 0.067 mins(max 1: 0.05)
Fit Model 2 of (6/10) K=2->10 N=605
EM 8 takes 0 mins, 50 iterations
cluster 3(N=9) has 2 sub-cluster at 2 (100), ICL=59<>34
split 3 into 2 clusters
cluster 6(N=55) has 3 sub-cluster at 4 (11), ICL=38<>34
split 6 into 3 clusters
cluster 7(N=74) has 2 sub-cluster at 2 (11), ICL=11<>34
cluster 8(N=72) has 4 sub-cluster at 5 (17), ICL=10<>34
cluster 2(N=220) has 2 sub-cluster at 2 (100), ICL=8.5<>34
cluster 1(N=237) has 5 sub-cluster at 8 (47), ICL=4.4<>34
cluster 1(N=237) has 5 sub-cluster at 8 (47), ICL=0<>34
Model Refinement takes 0.1 mins(max 1: 0.05)
Fit Model 3 of (6/10) K=8->11 N=1210
EM 6 takes 0 mins, 50 iterations
cluster 1(N=190) has 2 sub-cluster at 2 (5), ICL=50<>37
split 1 into 2 clusters
cluster 6(N=115) has 3 sub-cluster at 3 (16), ICL=19<>37
cluster 3(N=77) has 4 sub-cluster at 4 (11), ICL=17<>37
cluster 4(N=62) has 4 sub-cluster at 4 (12), ICL=15<>37
cluster 5(N=151) has 5 sub-cluster at 6 (44), ICL=13<>37
cluster 1(N=190) has 2 sub-cluster at 2 (5), ICL=0<>37
Model Refinement takes 0.1 mins(max 2: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 21 iterations
cluster 7(N=232) has 2 sub-cluster at 2 (7), ICL=78<>41
split 7 into 2 clusters
cluster 2(N=68) has 2 sub-cluster at 2 (6), ICL=46<>41
split 2 into 2 clusters
cluster 5(N=91) has 3 sub-cluster at 3 (25), ICL=23<>41
cluster 4(N=152) has 7 sub-cluster at 7 (15), ICL=18<>41
cluster 6(N=293) has 6 sub-cluster at 7 (46), ICL=14<>41
cluster 2(N=68) has 2 sub-cluster at 2 (6), ICL=0<>41
Model Refinement takes 0.15 mins(max 3: 0.05)
Fit Model 5 of (6/10) K=7->9 N=4841
EM 9 takes 0 mins, 8 iterations
cluster 5(N=281) has 3 sub-cluster at 3 (11), ICL=39<>45
cluster 2(N=77) has 2 sub-cluster at 2 (10), ICL=32<>45
cluster 6(N=205) has 3 sub-cluster at 3 (16), ICL=26<>45
cluster 9(N=27) has 2 sub-cluster at 2 (4), ICL=26<>45
cluster 7(N=535) has 2 sub-cluster at 2 (7), ICL=23<>45
cluster 8(N=446) has 3 sub-cluster at 3 (14), ICL=13<>45
cluster 1(N=1378) has 3 sub-cluster at 3 (14), ICL=8.6<>45
cluster 3(N=50) has 2 sub-cluster at 3 (9), ICL=7.3<>45
cluster 1(N=1378) has 3 sub-cluster at 3 (14), ICL=0<>45
Model Refinement takes 0.22 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0 mins, 5 iterations
cluster 5(N=556) has 3 sub-cluster at 3 (7), ICL=58<>48
split 5 into 3 clusters
cluster 2(N=158) has 2 sub-cluster at 2 (8), ICL=51<>48
split 2 into 2 clusters
cluster 1(N=2797) has 3 sub-cluster at 3 (12), ICL=48<>48
cluster 7(N=1119) has 2 sub-cluster at 2 (6), ICL=45<>48
cluster 6(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 9(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 8(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 3(N=74) has 3 sub-cluster at 4 (32), ICL=11<>48
cluster 1(N=2797) has 3 sub-cluster at 3 (12), ICL=0<>48
Model Refinement takes 0.27 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->12 N=9682
EM 12 takes 0.017 mins, 9 iterations
cluster 9(N=390) has 2 sub-cluster at 2 (5), ICL=38<>48
cluster 1(N=2868) has 3 sub-cluster at 3 (17), ICL=37<>48
cluster 10(N=1113) has 2 sub-cluster at 2 (6), ICL=32<>48
cluster 12(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 11(N=898) has 3 sub-cluster at 3 (9), ICL=29<>48
cluster 3(N=58) has 2 sub-cluster at 2 (14), ICL=25<>48
cluster 8(N=90) has 2 sub-cluster at 2 (8), ICL=17<>48
cluster 6(N=356) has 7 sub-cluster at 7 (33), ICL=13<>48
cluster 4(N=74) has 5 sub-cluster at 5 (21), ICL=13<>48
cluster 2(N=107) has 5 sub-cluster at 5 (24), ICL=11<>48
cluster 7(N=179) has 6 sub-cluster at 8 (46), ICL=10<>48
cluster 1(N=2868) has 3 sub-cluster at 3 (17), ICL=0<>48
Model Refinement takes 0.3 mins(max 5: 0.067)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.3 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (6), ICL=145<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (6), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 1(N=87) has 3 sub-cluster at 3 (9), ICL=102<>25
split 1 into 3 clusters
cluster 2(N=218) has 2 sub-cluster at 2 (7), ICL=55<>25
split 2 into 2 clusters
cluster 1(N=87) has 3 sub-cluster at 3 (9), ICL=0<>25
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 9 iterations
cluster 3(N=46) has 2 sub-cluster at 2 (6), ICL=32<>28
split 3 into 2 clusters
cluster 2(N=65) has 2 sub-cluster at 2 (14), ICL=24<>28
cluster 1(N=69) has 4 sub-cluster at 4 (25), ICL=20<>28
cluster 5(N=14) has 2 sub-cluster at 2 (100), ICL=13<>28
cluster 4(N=414) has 8 sub-cluster at 8 (27), ICL=6.3<>28
cluster 1(N=69) has 4 sub-cluster at 4 (25), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0 mins, 9 iterations
cluster 6(N=32) has 3 sub-cluster at 3 (11), ICL=42<>31
split 6 into 3 clusters
cluster 3(N=68) has 5 sub-cluster at 5 (11), ICL=24<>31
cluster 1(N=112) has 6 sub-cluster at 7 (27), ICL=20<>31
cluster 2(N=165) has 7 sub-cluster at 8 (50), ICL=18<>31
cluster 4(N=44) has 3 sub-cluster at 3 (18), ICL=10<>31
cluster 1(N=112) has 6 sub-cluster at 7 (27), ICL=0<>31
Model Refinement takes 0.083 mins(max 5: 0.033)
Fit Model 4 of (6/10) K=6->8 N=2420
EM 8 takes 0.017 mins, 50 iterations
cluster 3(N=141) has 3 sub-cluster at 4 (44), ICL=21<>34
cluster 1(N=233) has 5 sub-cluster at 5 (48), ICL=20<>34
cluster 4(N=97) has 4 sub-cluster at 4 (15), ICL=19<>34
cluster 2(N=280) has 7 sub-cluster at 7 (30), ICL=16<>34
cluster 6(N=44) has 2 sub-cluster at 2 (6), ICL=15<>34
cluster 5(N=1616) has 4 sub-cluster at 4 (8), ICL=11<>34
cluster 1(N=233) has 5 sub-cluster at 5 (48), ICL=0<>34
Model Refinement takes 0.13 mins(max 5: 0.05)
Fit Model 5 of (6/10) K=8->8 N=4841
EM 8 takes 0 mins, 11 iterations
cluster 5(N=3208) has 3 sub-cluster at 3 (7), ICL=69<>37
split 5 into 3 clusters
cluster 1(N=443) has 3 sub-cluster at 3 (9), ICL=40<>37
split 1 into 3 clusters
cluster 6(N=80) has 3 sub-cluster at 3 (11), ICL=36<>37
cluster 4(N=220) has 7 sub-cluster at 7 (18), ICL=26<>37
cluster 3(N=289) has 3 sub-cluster at 3 (7), ICL=22<>37
cluster 8(N=21) has 2 sub-cluster at 2 (7), ICL=19<>37
cluster 2(N=574) has 2 sub-cluster at 2 (6), ICL=14<>37
cluster 1(N=443) has 3 sub-cluster at 3 (9), ICL=0<>37
Model Refinement takes 0.15 mins(max 5: 0.05)
Fit Model 6 of (6/10) K=8->12 N=9682
EM 12 takes 0.017 mins, 9 iterations
cluster 5(N=547) has 3 sub-cluster at 3 (8), ICL=62<>40
split 5 into 3 clusters
cluster 4(N=1119) has 2 sub-cluster at 2 (6), ICL=50<>40
split 4 into 2 clusters
cluster 10(N=159) has 4 sub-cluster at 4 (16), ICL=45<>40
split 10 into 4 clusters
cluster 12(N=51) has 2 sub-cluster at 2 (100), ICL=43<>40
split 12 into 2 clusters
cluster 6(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 6 into 3 clusters
cluster 3(N=46) has 2 sub-cluster at 2 (11), ICL=25<>40
cluster 11(N=75) has 3 sub-cluster at 4 (11), ICL=6.5<>40
cluster 8(N=315) has 6 sub-cluster at 8 (26), ICL=6.2<>40
cluster 2(N=389) has 6 sub-cluster at 6 (28), ICL=0.79<>40
cluster 2(N=389) has 6 sub-cluster at 6 (28), ICL=0<>40
Model Refinement takes 0.3 mins(max 9: 0.067)
Fit Model 7 of (6/10) K=12->21 N=9682
EM 20 takes 0.017 mins, 8 iterations
cluster 10(N=115) has 4 sub-cluster at 4 (44), ICL=32<>40
cluster 3(N=36) has 2 sub-cluster at 2 (100), ICL=30<>40
cluster 9(N=223) has 6 sub-cluster at 8 (19), ICL=26<>40
cluster 15(N=89) has 5 sub-cluster at 5 (50), ICL=22<>40
cluster 18(N=19) has 2 sub-cluster at 2 (5), ICL=15<>40
cluster 16(N=22) has 2 sub-cluster at 2 (8), ICL=15<>40
cluster 6(N=353) has 5 sub-cluster at 5 (16), ICL=14<>40
cluster 13(N=308) has 7 sub-cluster at 8 (60), ICL=13<>40
cluster 11(N=137) has 7 sub-cluster at 8 (37), ICL=12<>40
cluster 7(N=178) has 6 sub-cluster at 8 (22), ICL=9.8<>40
cluster 8(N=87) has 3 sub-cluster at 3 (23), ICL=7.6<>40
cluster 19(N=75) has 3 sub-cluster at 4 (12), ICL=6.7<>40
cluster 2(N=393) has 7 sub-cluster at 8 (38), ICL=4.4<>40
cluster 5(N=449) has 8 sub-cluster at 8 (13), ICL=0.35<>40
cluster 2(N=393) has 7 sub-cluster at 8 (38), ICL=0<>40
Model Refinement takes 0.38 mins(max 12: 0.067)
Fit Model 8 of (6/10) K=20->20 N=9682
EM 20 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.2 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted