Kenong Su
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/iPath |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1e67be4 |
| git_last_commit_date: 2024-10-29 11:02:27 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:30 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1047/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| iPath 1.12.0 (landing page) Kenong Su
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the iPath package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iPath.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: iPath |
| Version: 1.12.0 |
| Command: chmod a+r iPath -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data iPath |
| StartedAt: 2025-03-31 19:43:15 -0400 (Mon, 31 Mar 2025) |
| EndedAt: 2025-03-31 19:44:16 -0400 (Mon, 31 Mar 2025) |
| EllapsedTime: 60.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r iPath -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data iPath
###
##############################################################################
##############################################################################
* checking for file 'iPath/DESCRIPTION' ... OK
* preparing 'iPath':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'iPath.Rmd' using rmarkdown
Quitting from iPath.Rmd:82-85 [cal_iES2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `serialize()`:
! error writing to connection
---
Backtrace:
▆
1. └─iPath::iES_cal2(Y = prad_exprs, GSDB = GSDB_example)
2. ├─BiocParallel::bplapply(seq_len(npats), FUN = bp_fun, BPPARAM = tmpParam)
3. └─BiocParallel::bplapply(seq_len(npats), FUN = bp_fun, BPPARAM = tmpParam)
4. └─BiocParallel:::.bpinit(...)
5. ├─BiocParallel::bpstop(BPPARAM)
6. └─BiocParallel::bpstop(BPPARAM)
7. └─BiocParallel::.bpstop_impl(x)
8. └─BiocParallel:::.bpstop_nodes(x)
9. ├─BiocParallel::.manager_send_all(manager, .DONE())
10. └─BiocParallel::.manager_send_all(manager, .DONE())
11. ├─BiocParallel::.send_all(manager$backend, value)
12. └─BiocParallel::.send_all(manager$backend, value)
13. ├─BiocParallel::.send_to(backend, node, value)
14. └─BiocParallel::.send_to(backend, node, value)
15. ├─parallel:::sendData(backend[[node]], value)
16. └─parallel:::sendData.SOCKnode(backend[[node]], value)
17. └─base::serialize(data, node$con)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'iPath.Rmd' failed with diagnostics:
error writing to connection
--- failed re-building 'iPath.Rmd'
SUMMARY: processing the following file failed:
'iPath.Rmd'
Error: Vignette re-building failed.
Execution halted
Error in serialize(data, node$con) : error writing to connection
Calls: <Anonymous> ... .send_to -> <Anonymous> -> sendData.SOCKnode -> serialize