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This page was generated on 2025-01-20 12:16 -0500 (Mon, 20 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 932/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.40.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2025-01-19 12:27 -0500 (Sun, 19 Jan 2025)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: RELEASE_3_20
git_last_commit: 6e56c15
git_last_commit_date: 2024-10-29 09:49:12 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

BUILD results for h5vc on palomino8

To the developers/maintainers of the h5vc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: h5vc
Version: 2.40.0
Command: chmod a+r h5vc -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2025-01-19 18:04:51 -0500 (Sun, 19 Jan 2025)
EndedAt: 2025-01-19 18:06:08 -0500 (Sun, 19 Jan 2025)
EllapsedTime: 77.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r h5vc -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
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* checking for file 'h5vc/DESCRIPTION' ... OK
* preparing 'h5vc':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'h5vc.simple.genome.browser.Rmd' using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'h5vc.simple.genome.browser.knit'
--- finished re-building 'h5vc.simple.genome.browser.Rmd'

--- re-building 'h5vc.tour.Rmd' using rmarkdown

Quitting from lines 234-254 [unnamed-chunk-1] (h5vc.tour.Rmd)
Error: processing vignette 'h5vc.tour.Rmd' failed with diagnostics:
Failed to parse URL: Bad scheme
--- failed re-building 'h5vc.tour.Rmd'

SUMMARY: processing the following file failed:
  'h5vc.tour.Rmd'

Error: Vignette re-building failed.
Execution halted