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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL garfield
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* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘garfield’ ...
** using staged installation
** libs
using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c garfield_init.c -o garfield_init.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall  -c garfield_perm.cpp -o garfield_perm.o
garfield_perm.cpp: In function 'void batchfeep(std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, const std::vector<bin>&, const std::vector<double>&, int, int, bool, int, double, int, std::vector<bool>)':
garfield_perm.cpp:306:29: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'long int' [-Wformat=]
  306 |                 Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                            ~^                                                          ~~~
      |                             |                                                           |
      |                             char*                                                       long int
      |                            %ld
garfield_perm.cpp:306:32: warning: format '%s' expects argument of type 'char*', but argument 3 has type 'int' [-Wformat=]
  306 |                 Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                               ~^                                                           ~~~~~~
      |                                |                                                           |
      |                                char*                                                       int
      |                               %d
garfield_perm.cpp:306:38: warning: format '%s' expects argument of type 'char*', but argument 4 has type 'double' [-Wformat=]
  306 |                 Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                                     ~^                                                             ~~~~~~~~~~~~~~~~~~~~~~
      |                                      |                                                                           |
      |                                      char*                                                                       double
      |                                     %f
garfield_perm.cpp:306:41: warning: unknown conversion type character '\x09' in format [-Wformat=]
  306 |                 Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                                         ^~
garfield_perm.cpp:306:46: warning: format '%s' expects argument of type 'char*', but argument 5 has type 'int' [-Wformat=]
  306 |                 Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                                             ~^                                                                             ~~~~~~
      |                                              |                                                                             |
      |                                              char*                                                                         int
      |                                             %d
garfield_perm.cpp:306:83: warning: format '%s' expects argument of type 'char*', but argument 6 has type 'double' [-Wformat=]
  306 |                 Rprintf("\r%s/%s\t\t%s\%\t\t%s annotations/s\t\t Time remaining: %s s",j+1,nannot, 100.0 * (j+1) / nannot, nannot,1.0 * (nannot - (j+1)) / perms_per_sec   );
      |                                                                                  ~^                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                                                                   |                                                                      |
      |                                                                                   char*                                                                  double
      |                                                                                  %f
garfield_perm.cpp: In function 'int garfield_perm(char**, char**, char**, char**, char**, char**, char**, char**, char**, char**, char**, char**, char**)':
garfield_perm.cpp:356:27: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'int' [-Wformat=]
  356 |                 Rprintf("%s",nannot);
      |                          ~^  ~~~~~~
      |                           |  |
      |                           |  int
      |                           char*
      |                          %d
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall  -c garfield_prep.cpp -o garfield_prep.o
garfield_prep.cpp:144:28: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
  144 | struct Enumerator : public iterator<input_iterator_tag, typename Iterator::value_type>  {
      |                            ^~~~~~~~
In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_algobase.h:65,
                 from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/algorithm:60,
                 from garfield_prep.cpp:19:
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
garfield_prep.cpp:225:37: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
  225 | struct TagsOutputIterator1 : public iterator<output_iterator_tag,void,void,void,void> {
      |                                     ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
garfield_prep.cpp:234:37: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
  234 | struct TagsOutputIterator2 : public iterator<output_iterator_tag,void,void,void,void> {
      |                                     ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
garfield_prep.cpp:245:38: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
  245 | struct TagRefOutputIterator : public iterator<output_iterator_tag,void,void,void,void> {
      |                                      ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
garfield_prep.cpp:273:37: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
  273 | struct PrintOutputIterator : public iterator<output_iterator_tag,void,void,void,void> {
      |                                     ^~~~~~~~
/home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o garfield.so garfield_init.o garfield_perm.o garfield_prep.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-garfield/00new/garfield/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (garfield)