Multiple platform build/check report for BioC 3.20 - BUILD results for flowPloidy on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4505
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4506
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4538
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4486
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for flowPloidy on kjohnson3

To the developers/maintainers of the flowPloidy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPloidy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: flowPloidy

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy

StartedAt: 2024-11-08 17:17:30 -0500 (Fri, 08 Nov 2024)

EndedAt: 2024-11-08 17:17:42 -0500 (Fri, 08 Nov 2024)

EllapsedTime: 12.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy
###
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* checking for file ‘flowPloidy/DESCRIPTION’ ... OK
* preparing ‘flowPloidy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘flowPloidy-gettingStarted.Rmd’ using rmarkdown
! LaTeX Error: Lonely \item--perhaps a missing list environment.

Error: processing vignette 'flowPloidy-gettingStarted.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpFNli0l/Rbuildb661216f7c23/flowPloidy/vignettes/flowPloidy-gettingStarted.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See flowPloidy-gettingStarted.log for more info.
--- failed re-building ‘flowPloidy-gettingStarted.Rmd’

--- re-building ‘histogram-tour.Rmd’ using rmarkdown
! LaTeX Error: Lonely \item--perhaps a missing list environment.

Error: processing vignette 'histogram-tour.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpFNli0l/Rbuildb661216f7c23/flowPloidy/vignettes/histogram-tour.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See histogram-tour.log for more info.
--- failed re-building ‘histogram-tour.Rmd’

SUMMARY: processing the following files failed:
  ‘flowPloidy-gettingStarted.Rmd’ ‘histogram-tour.Rmd’

Error: Vignette re-building failed.
Execution halted