Multiple platform build/check report for BioC 3.20 - BUILD results for flowPeaks on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4670
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4355
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4446
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4439
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4306
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for flowPeaks on palomino8

To the developers/maintainers of the flowPeaks package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: flowPeaks

Version: 1.52.0

Command: chmod a+r flowPeaks -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data flowPeaks

StartedAt: 2025-03-06 19:26:21 -0500 (Thu, 06 Mar 2025)

EndedAt: 2025-03-06 19:30:59 -0500 (Thu, 06 Mar 2025)

EllapsedTime: 277.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r flowPeaks -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data flowPeaks
###
##############################################################################
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* checking for file 'flowPeaks/DESCRIPTION' ... OK
* preparing 'flowPeaks':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'flowPeaks-guide.Rnw' using Sweave

Starting the flow Peaks analysis...

    Task A: compute kmeans...

        ...finished summarization at 0.69 sec

    Task B: find peaks...
finished at 0.79 sec



Starting the flow Peaks analysis...

    Task A: compute kmeans...

        ...finished summarization at 0.41 sec

    Task B: find peaks...
finished at 0.5 sec


Loading required package: flowCore
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'flowCore'

Error: processing vignette 'flowPeaks-guide.Rnw' failed with diagnostics:
 chunk 17 (label = stage7) 
Error in read.FCS(system.file("extdata", "0877408774.B08", package = "flowCore")) : 
  could not find function "read.FCS"

--- failed re-building 'flowPeaks-guide.Rnw'

SUMMARY: processing the following file failed:
  'flowPeaks-guide.Rnw'

Error: Vignette re-building failed.
Execution halted