Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-03-10 12:10 -0400 (Mon, 10 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4670
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4355
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4446
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4439
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4306
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 663/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epiregulon.extra 1.2.1  (landing page)
Xiaosai Yao
Snapshot Date: 2025-03-06 13:00 -0500 (Thu, 06 Mar 2025)
git_url: https://git.bioconductor.org/packages/epiregulon.extra
git_branch: RELEASE_3_20
git_last_commit: 3bcfcaf
git_last_commit_date: 2025-03-04 01:03:41 -0500 (Tue, 04 Mar 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  YES
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  YES
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for epiregulon.extra on kjohnson1

To the developers/maintainers of the epiregulon.extra package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiregulon.extra.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: epiregulon.extra
Version: 1.2.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiregulon.extra
StartedAt: 2025-03-07 00:14:16 -0500 (Fri, 07 Mar 2025)
EndedAt: 2025-03-07 00:17:11 -0500 (Fri, 07 Mar 2025)
EllapsedTime: 175.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiregulon.extra
###
##############################################################################
##############################################################################


* checking for file ‘epiregulon.extra/DESCRIPTION’ ... OK
* preparing ‘epiregulon.extra’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Data_visualization.Rmd’ using rmarkdown
2025-03-07 00:16:12.698 R[45027:271539127] XType: Using static font registry.

Quitting from lines 248-254 [plot gsea network] (Data_visualization.Rmd)
Error: processing vignette 'Data_visualization.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error:
! vector memory limit of 64.0 Gb reached, see mem.maxVSize()
--- failed re-building ‘Data_visualization.Rmd’

SUMMARY: processing the following file failed:
  ‘Data_visualization.Rmd’

Error: Vignette re-building failed.
Execution halted