Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2025-01-16 12:11 -0500 (Thu, 16 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4489
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4517
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4469
taishanLinux (openEuler 24.03 LTS)aarch644.4.2 (2024-10-31) -- "Pile of Leaves" 4387
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 319/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cfTools 1.6.0  (landing page)
Ran Hu
Snapshot Date: 2025-01-13 13:00 -0500 (Mon, 13 Jan 2025)
git_url: https://git.bioconductor.org/packages/cfTools
git_branch: RELEASE_3_20
git_last_commit: 25521eb
git_last_commit_date: 2024-10-29 11:20:19 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for cfTools on taishan

To the developers/maintainers of the cfTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cfTools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: cfTools
Version: 1.6.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cfTools
StartedAt: 2025-01-14 10:44:55 -0000 (Tue, 14 Jan 2025)
EndedAt: 2025-01-14 10:47:21 -0000 (Tue, 14 Jan 2025)
EllapsedTime: 146.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cfTools
###
##############################################################################
##############################################################################


* checking for file ‘cfTools/DESCRIPTION’ ... OK
* preparing ‘cfTools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cfTools-vignette.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.18.0/cfTools/1.6.0/new_env

  added / updated specs:
    - python=3.8


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    pip-24.3.1                 |     pyh8b19718_0         1.2 MB  conda-forge
    python-3.8.20              |hbf90c55_2_cpython        11.6 MB  conda-forge
    setuptools-75.3.0          |     pyhd8ed1ab_0         761 KB  conda-forge
    wheel-0.45.1               |     pyhd8ed1ab_0          62 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        13.6 MB

The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7 
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.12.14-hcefe29a_0 
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2 
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5 
  libgcc             conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1 
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1 
  libgomp            conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1 
  liblzma            conda-forge/linux-aarch64::liblzma-5.6.3-h86ecc28_1 
  liblzma-devel      conda-forge/linux-aarch64::liblzma-devel-5.6.3-h86ecc28_1 
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0 
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.47.2-h5eb1b54_0 
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0 
  libxcrypt          conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 
  libzlib            conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2 
  ncurses            conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_2 
  openssl            conda-forge/linux-aarch64::openssl-3.4.0-hd08dc88_1 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_0 
  python             conda-forge/linux-aarch64::python-3.8.20-hbf90c55_2_cpython 
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1 
  setuptools         conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0 
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0 
  xz                 conda-forge/linux-aarch64::xz-5.6.3-h2dbfc1b_1 
  xz-gpl-tools       conda-forge/linux-aarch64::xz-gpl-tools-5.6.3-h2dbfc1b_1 
  xz-tools           conda-forge/linux-aarch64::xz-tools-5.6.3-h86ecc28_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.3

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

PackagesNotFoundError: The following packages are not available from current channels:

  - tensorflow=2.10.0*

Current channels:

  - https://conda.anaconda.org/conda-forge

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.



Quitting from lines 165-167 [unnamed-chunk-3] (cfTools-vignette.Rmd)
Error: processing vignette 'cfTools-vignette.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘cfTools-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘cfTools-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted