Pierrick Roger
| Snapshot Date: 2025-03-06 13:00 -0500 (Thu, 06 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_20 |
| git_last_commit: 0eb718c |
| git_last_commit_date: 2024-10-29 11:06:39 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-10 12:05 -0400 (Mon, 10 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4670 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4355 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4446 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4439 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4306 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 204/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz |
| StartedAt: 2025-03-06 20:42:12 -0500 (Thu, 06 Mar 2025) |
| EndedAt: 2025-03-06 20:43:17 -0500 (Thu, 06 Mar 2025) |
| EllapsedTime: 65.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-06 20:42:41.917][biodb::testContext]
biodb.INFO [2025-03-06 20:42:41.919][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:42:41.920][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-06 20:42:41.921][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:42:41.922][biodb::testContext]
biodb.INFO [2025-03-06 20:42:41.923][biodb::testThat]
biodb.INFO [2025-03-06 20:42:41.924][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-06 20:42:41.925][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:41.926][biodb::testThat]
biodb.INFO [2025-03-06 20:42:42.008][biodb::testContext]
biodb.INFO [2025-03-06 20:42:42.009][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:42:42.010][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-06 20:42:42.011][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:42:42.012][biodb::testContext]
biodb.INFO [2025-03-06 20:42:42.019][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-06 20:42:42.021][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-06 20:42:42.027][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:42:42.028][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-06 20:42:42.029][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-06 20:42:42.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.033][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-06 20:42:42.057][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-06 20:42:42.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.060][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-06 20:42:42.061][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-06 20:42:42.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.065][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-06 20:42:42.066][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-06 20:42:42.067][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-06 20:42:42.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.070][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-06 20:42:42.071][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-06 20:42:42.072][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-06 20:42:42.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.075][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-06 20:42:42.076][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-06 20:42:42.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.080][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-06 20:42:42.081][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-06 20:42:42.081][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-06 20:42:42.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.085][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-06 20:42:42.086][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-06 20:42:42.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.089][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-06 20:42:42.090][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-06 20:42:42.091][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-06 20:42:42.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.095][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-06 20:42:42.096][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-06 20:42:42.097][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-06 20:42:42.097][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-06 20:42:42.098][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-06 20:42:42.099][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-06 20:42:42.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.103][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-06 20:42:42.104][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-06 20:42:42.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.107][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-06 20:42:42.108][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-06 20:42:42.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.111][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-06 20:42:42.112][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-06 20:42:42.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.116][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-06 20:42:42.116][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-06 20:42:42.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.120][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-06 20:42:42.121][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-06 20:42:42.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.124][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-06 20:42:42.125][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-06 20:42:42.128][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-06 20:42:42.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.131][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-06 20:42:42.132][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-06 20:42:42.133][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-06 20:42:42.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.139][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-06 20:42:42.184][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.202][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-06 20:42:42.203][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.204][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:42:42.205][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.206][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.208][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.209][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.210][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-06 20:42:42.211][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:42:42.212][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.213][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-06 20:42:42.214][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:42:42.215][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.216][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.217][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:42:42.217][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-06 20:42:42.217][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-06 20:42:42.217][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-06 20:42:42.217][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-06 20:42:42.218][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:42:42.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.221][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:42:42.222][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.223][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.224][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.225][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.226][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:42:42.227][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:42:42.228][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.229][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.230][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-06 20:42:42.232][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.233][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-06 20:42:42.248][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.250][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:42:42.251][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.252][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.253][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.254][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.255][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-06 20:42:42.256][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:42:42.257][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.258][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-06 20:42:42.259][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:42:42.260][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.261][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.262][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:42:42.262][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-06 20:42:42.262][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-06 20:42:42.262][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-06 20:42:42.262][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-06 20:42:42.263][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:42:42.264][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.265][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.266][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:42:42.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.268][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.269][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.270][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:42:42.271][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:42:42.272][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.273][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.275][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-06 20:42:42.277][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.278][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-06 20:42:42.279][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.280][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:42:42.281][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.282][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.283][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.284][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.285][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-06 20:42:42.286][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:42:42.287][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.288][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-06 20:42:42.289][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:42:42.290][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.291][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.292][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.293][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:42:42.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.296][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:42:42.297][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.298][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.299][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.300][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.301][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:42:42.301][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:42:42.302][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.303][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.305][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-06 20:42:42.307][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.308][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-06 20:42:42.309][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.310][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:42:42.311][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.312][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.313][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.315][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-06 20:42:42.316][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:42:42.317][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.318][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-06 20:42:42.319][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:42:42.320][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.321][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.322][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.323][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:42:42.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.325][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.326][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:42:42.327][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.328][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.329][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.330][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:42:42.331][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:42:42.332][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.333][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.337][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:42:42.338][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.411][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-06 20:42:42.416][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-06 20:42:42.417][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-06 20:42:42.419][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-06 20:42:42.420][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-06 20:42:42.426][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-06 20:42:42.428][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-06 20:42:42.429][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-06 20:42:42.430][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-06 20:42:42.431][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-06 20:42:42.433][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-06 20:42:42.434][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-06 20:42:42.435][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-06 20:42:42.436][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-06 20:42:42.438][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-06 20:42:42.439][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-06 20:42:42.440][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-06 20:42:42.441][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-06 20:42:42.443][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-06 20:42:42.444][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-06 20:42:42.445][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-06 20:42:42.447][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-06 20:42:42.448][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-06 20:42:42.449][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-06 20:42:42.451][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-06 20:42:42.452][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-06 20:42:42.453][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-06 20:42:42.455][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-06 20:42:42.456][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-06 20:42:42.457][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-06 20:42:42.459][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-06 20:42:42.460][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-06 20:42:42.461][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-06 20:42:42.462][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-06 20:42:42.464][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-06 20:42:42.465][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-06 20:42:42.466][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-06 20:42:42.468][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-06 20:42:42.469][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-06 20:42:42.470][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-06 20:42:42.471][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-06 20:42:42.473][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-06 20:42:42.474][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-06 20:42:42.475][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-06 20:42:42.477][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-06 20:42:42.478][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-06 20:42:42.479][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-06 20:42:42.481][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-06 20:42:42.482][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-06 20:42:42.483][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-06 20:42:42.485][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-06 20:42:42.486][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-06 20:42:42.487][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-06 20:42:42.489][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-06 20:42:42.490][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-06 20:42:42.491][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-06 20:42:42.493][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-06 20:42:42.494][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-06 20:42:42.495][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-06 20:42:42.497][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-06 20:42:42.498][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-06 20:42:42.499][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-06 20:42:42.500][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-06 20:42:42.502][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-06 20:42:42.503][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-06 20:42:42.505][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-06 20:42:42.506][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-06 20:42:42.507][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-06 20:42:42.508][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-06 20:42:42.510][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-06 20:42:42.511][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-06 20:42:42.512][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-06 20:42:42.513][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-06 20:42:42.515][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-06 20:42:42.516][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-06 20:42:42.517][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-06 20:42:42.519][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-06 20:42:42.520][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-06 20:42:42.521][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-06 20:42:42.523][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-06 20:42:42.524][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-06 20:42:42.525][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-06 20:42:42.526][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-06 20:42:42.532][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-06 20:42:42.534][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-06 20:42:42.537][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:42:42.538][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.539][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:42:42.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:42:42.678][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-06 20:42:42.688][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:42:42.690][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.691][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.692][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.692][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:42:42.693][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.694][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-06 20:42:42.695][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.696][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.697][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-06 20:42:42.698][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:42:42.699][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.700][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-06 20:42:42.701][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-06 20:42:42.702][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-06 20:42:42.703][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-06 20:42:42.704][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:42:42.704][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-06 20:42:42.704][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-06 20:42:42.705][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-06 20:42:42.706][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.708][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:42:42.709][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:42:42.710][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:42:42.710][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:42:42.711][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-06 20:42:42.711][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-06 20:42:42.712][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:42:42.713][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:42:42.714][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-06 20:42:42.715][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:42:42.722][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-06 20:42:42.723][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-06 20:42:42.725][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-06 20:42:42.726][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-06 20:42:42.728][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-06 20:42:42.752][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:42:42.753][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-06 20:42:42.757][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:42:42.761][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:42:42.765][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:42:42.766][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:42:42.767][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-06 20:42:42.768][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-06 20:42:42.769][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-06 20:42:42.769][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-06 20:42:42.770][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:42:42.771][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:42:42.772][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-06 20:42:42.773][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-06 20:42:42.774][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:42:42.797][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:42:42.798][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:42:42.799][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:42:42.800][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:42:42.801][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:42:42.802][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-06 20:42:42.809][biodb::testThat]
biodb.INFO [2025-03-06 20:42:42.810][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-06 20:42:42.811][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:42.812][biodb::testThat]
biodb.TRACE[2025-03-06 20:42:42.816][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-06 20:42:42.817][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:42:42.820][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:42:42.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:42:42.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:42.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:42.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:42.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:42.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:42.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:42:42.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:42.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:42.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.850][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.867][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:42.868][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:42.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.898][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:42.899][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:42.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.901][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.902][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:42.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.906][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:42.907][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.909][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:42.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:42.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:42.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:42.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:42.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.921][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:42.922][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:42.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.929][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:42.930][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:42.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.932][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.933][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:42.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.946][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.951][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:42.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:42.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:42.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.958][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:42.959][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:42.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.966][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:42.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:42.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:42.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.977][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:42.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:42.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.984][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:42.991][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:42.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.992][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:42.998][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:42.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.000][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.005][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.006][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.008][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.013][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.021][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:42:43.022][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.023][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:42:43.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.081][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.092][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:42:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.280][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:42:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.323][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:43.361][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-06 20:42:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-06 20:42:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-06 20:42:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-06 20:42:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-06 20:42:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-06 20:42:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-06 20:42:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-06 20:42:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-06 20:42:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.439][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.461][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.463][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.475][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.491][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.492][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.494][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.517][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.518][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.519][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.571][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.649][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.650][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.674][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.677][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.688][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.699][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.700][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.702][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:43.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.749][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.754][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.756][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.805][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.808][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.833][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.883][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.902][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.905][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.909][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.910][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:43.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.930][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.931][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.937][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.938][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:43.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.940][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.951][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.952][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:43.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.954][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.958][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:43.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.960][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.965][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.966][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.971][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.973][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.979][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:43.980][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.986][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:43.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.989][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:43.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:43.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.003][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.009][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.025][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.028][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.038][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.039][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:44.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:44.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.048][ef$get] fields variable is a list.
biodb.INFO [2025-03-06 20:42:44.055][biodb::testThat]
biodb.INFO [2025-03-06 20:42:44.056][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-06 20:42:44.057][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:44.058][biodb::testThat]
biodb.DEBUG[2025-03-06 20:42:44.073][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-06 20:42:44.080][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-06 20:42:44.085][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.087][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-06 20:42:44.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-06 20:42:44.090][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-06 20:42:44.093][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-06 20:42:44.094][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-06 20:42:44.118][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:42:44.119][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:42:44.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:42:44.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:42:44.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:42:44.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:42:44.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:42:44.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:42:44.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:42:44.133][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.141][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.142][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.143][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.148][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.149][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.156][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.157][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.164][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.177][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.178][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.179][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.184][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.185][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.195][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.200][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.201][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.208][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.216][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:44.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:44.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:44.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:44.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.226][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.234][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.256][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.257][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:44.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:44.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.266][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.271][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:42:44.272][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.274][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:42:44.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.290][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.302][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:42:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.306][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:42:44.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:42:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:42:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:42:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:42:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:42:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.377][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:44.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:42:44.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:42:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:42:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:42:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:42:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:42:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:42:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.475][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:42:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:42:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:42:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:42:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:42:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:42:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:42:44.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:42:44.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.570][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-06 20:42:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-06 20:42:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-06 20:42:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-06 20:42:44.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-06 20:42:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-06 20:42:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-06 20:42:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-06 20:42:44.588][biodb::testThat]
biodb.INFO [2025-03-06 20:42:44.589][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-06 20:42:44.590][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:44.591][biodb::testThat]
biodb.TRACE[2025-03-06 20:42:44.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.597][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.598][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-06 20:42:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.636][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-06 20:42:44.638][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-06 20:42:44.639][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-06 20:42:44.639][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-06 20:42:44.641][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.642][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.644][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:42:44.645][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.646][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:42:44.647][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:42:44.648][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:42:44.649][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:42:44.650][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:42:44.651][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:42:44.652][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-06 20:42:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.669][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:42:44.670][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:42:44.671][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-06 20:42:44.681][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.683][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.684][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.690][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-06 20:42:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.715][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-06 20:42:44.766][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-06 20:42:44.767][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-06 20:42:44.768][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-06 20:42:44.782][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.784][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.785][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:42:44.786][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.787][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:42:44.806][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:42:44.808][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:42:44.809][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:42:44.809][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:42:44.810][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:42:44.811][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-06 20:42:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:42:44.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:42:44.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.829][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:42:44.830][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:42:44.831][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-06 20:42:44.842][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.843][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.844][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.845][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-06 20:42:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.869][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-06 20:42:44.870][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-06 20:42:44.871][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-06 20:42:44.872][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-06 20:42:44.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.875][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.877][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:42:44.878][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.879][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:42:44.880][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:42:44.881][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:42:44.882][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:42:44.883][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:42:44.884][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:42:44.885][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-06 20:42:44.887][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.890][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:42:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.902][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:42:44.902][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:42:44.903][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-06 20:42:44.916][biodb::testThat]
biodb.INFO [2025-03-06 20:42:44.917][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-06 20:42:44.918][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:44.919][biodb::testThat]
biodb.TRACE[2025-03-06 20:42:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.954][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-06 20:42:44.955][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-06 20:42:44.956][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-06 20:42:44.957][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.959][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.960][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:42:44.962][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:42:44.962][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:42:44.964][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:42:44.965][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:42:44.966][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:42:44.967][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:42:44.968][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:42:44.968][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-06 20:42:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:42:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:42:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:44.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:42:44.985][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:42:44.986][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-06 20:42:45.000][biodb::testThat]
biodb.INFO [2025-03-06 20:42:45.001][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-06 20:42:45.002][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:45.003][biodb::testThat]
biodb.TRACE[2025-03-06 20:42:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-06 20:42:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-06 20:42:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-06 20:42:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-06 20:42:45.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-06 20:42:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-06 20:42:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-06 20:42:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:42:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-06 20:42:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-06 20:42:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:42:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-06 20:42:45.103][biodb::testThat]
biodb.INFO [2025-03-06 20:42:45.104][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-06 20:42:45.105][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:45.106][biodb::testThat]
biodb.INFO [2025-03-06 20:42:45.113][biodb::testThat]
biodb.INFO [2025-03-06 20:42:45.114][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-06 20:42:45.115][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:45.116][biodb::testThat]
biodb.INFO [2025-03-06 20:42:45.123][biodb::testThat]
biodb.INFO [2025-03-06 20:42:45.124][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-06 20:42:45.125][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:45.126][biodb::testThat]
biodb.DEBUG[2025-03-06 20:42:45.129][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-06 20:42:55.920][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-06 20:42:58.011][biodb::testThat]
biodb.INFO [2025-03-06 20:42:58.014][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-06 20:42:58.016][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:42:58.018][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:05.507][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-06 20:43:05.559][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:05.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.563][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.565][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:05.566][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:05.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.569][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.570][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:05.572][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:05.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.575][ef$get] fields variable is a list.
biodb.INFO [2025-03-06 20:43:05.577][biodb::testThat]
biodb.INFO [2025-03-06 20:43:05.579][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-03-06 20:43:05.580][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:05.582][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:05.585][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-06 20:43:05.673][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-03-06 20:43:05.675][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-03-06 20:43:05.677][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-03-06 20:43:05.678][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-03-06 20:43:05.679][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-03-06 20:43:05.681][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-03-06 20:43:05.682][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-06 20:43:05.684][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-06 20:43:05.685][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-06 20:43:05.686][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-03-06 20:43:05.688][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker30d8d5a9111bmarker".
biodb.TRACE[2025-03-06 20:43:05.689][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-03-06 20:43:05.690][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-06 20:43:05.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-06 20:43:05.693][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-03-06 20:43:05.694][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2025-03-06 20:43:05.695][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-03-06 20:43:05.696][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2025-03-06 20:43:05.703][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-03-06 20:43:05.704][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-03-06 20:43:05.705][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-03-06 20:43:05.706][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2025-03-06 20:43:05.714][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-03-06 20:43:05.715][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-06 20:43:05.716][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-03-06 20:43:05.717][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-03-06 20:43:05.719][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker30d8d5777ff556marker".
biodb.TRACE[2025-03-06 20:43:05.720][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-03-06 20:43:05.721][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-03-06 20:43:05.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-06 20:43:05.740][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-06 20:43:05.741][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-06 20:43:05.742][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-06 20:43:05.744][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.780][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:43:05.781][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:43:05.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:05.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:05.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:05.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:05.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:05.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:05.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.798][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:05.827][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-06 20:43:05.828][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-06 20:43:05.845][biodb::testThat]
biodb.INFO [2025-03-06 20:43:05.846][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-06 20:43:05.847][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:05.848][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:05.855][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-06 20:43:05.856][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-06 20:43:05.857][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-06 20:43:05.859][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-06 20:43:05.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-06 20:43:05.864][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-06 20:43:05.865][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-06 20:43:05.866][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-06 20:43:05.868][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.869][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:43:05.870][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:43:05.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:05.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:05.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:05.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:05.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:05.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:05.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:05.921][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-06 20:43:05.922][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-06 20:43:05.923][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-06 20:43:05.935][biodb::testThat]
biodb.INFO [2025-03-06 20:43:05.936][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-03-06 20:43:05.937][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:05.938][biodb::testThat]
biodb.INFO [2025-03-06 20:43:05.958][biodb::testThat]
biodb.INFO [2025-03-06 20:43:05.959][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-03-06 20:43:05.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:05.961][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:05.963][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.965][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.966][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:43:05.968][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.968][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:43:05.970][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:43:05.971][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:43:05.972][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:43:05.973][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-06 20:43:05.979][biodb::testThat]
biodb.INFO [2025-03-06 20:43:05.980][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-03-06 20:43:05.981][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:05.982][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:05.984][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.986][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.987][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:43:05.989][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:05.990][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:43:05.991][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:43:05.992][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:43:05.993][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:43:05.994][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-06 20:43:06.007][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:06.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:06.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.010][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.011][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:06.012][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:06.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.015][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:06.016][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:06.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.018][ef$get] fields variable is a list.
biodb.INFO [2025-03-06 20:43:06.019][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-06 20:43:06.020][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-06 20:43:06.028][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-06 20:43:06.029][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-06 20:43:06.029][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.031][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.033][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-06 20:43:06.038][biodb::testContext]
biodb.INFO [2025-03-06 20:43:06.039][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:43:06.040][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-06 20:43:06.041][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:43:06.042][biodb::testContext]
biodb.INFO [2025-03-06 20:43:06.045][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-06 20:43:06.047][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-06 20:43:06.051][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:43:06.052][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-06 20:43:06.053][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-06 20:43:06.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.056][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-06 20:43:06.058][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-06 20:43:06.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.061][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-06 20:43:06.062][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-06 20:43:06.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.065][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-06 20:43:06.066][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-06 20:43:06.067][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-06 20:43:06.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.071][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-06 20:43:06.072][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-06 20:43:06.073][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-06 20:43:06.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.077][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-06 20:43:06.078][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-06 20:43:06.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.081][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-06 20:43:06.082][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-06 20:43:06.084][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-06 20:43:06.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.087][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-06 20:43:06.088][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-06 20:43:06.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.092][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-06 20:43:06.093][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-06 20:43:06.094][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-06 20:43:06.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.097][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-06 20:43:06.098][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-06 20:43:06.099][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-06 20:43:06.100][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-06 20:43:06.101][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-06 20:43:06.102][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-06 20:43:06.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.106][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-06 20:43:06.107][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-06 20:43:06.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.115][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-06 20:43:06.116][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-06 20:43:06.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.120][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-06 20:43:06.121][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-06 20:43:06.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.124][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-06 20:43:06.125][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-06 20:43:06.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.128][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-06 20:43:06.129][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-06 20:43:06.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.133][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-06 20:43:06.134][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-06 20:43:06.138][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-06 20:43:06.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.141][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-06 20:43:06.142][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-06 20:43:06.143][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-06 20:43:06.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.147][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-06 20:43:06.149][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.150][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-06 20:43:06.151][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.152][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:06.153][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.154][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.155][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.156][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.157][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-06 20:43:06.158][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:06.159][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.160][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-06 20:43:06.161][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:06.162][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.163][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.164][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:43:06.164][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-06 20:43:06.164][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-06 20:43:06.164][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-06 20:43:06.164][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-06 20:43:06.165][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:06.166][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.166][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.167][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:06.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.171][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.172][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:06.173][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:06.174][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.175][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.176][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-06 20:43:06.178][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.179][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-06 20:43:06.180][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.181][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:06.182][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.183][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.184][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.185][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.186][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-06 20:43:06.187][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:06.188][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.189][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-06 20:43:06.190][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:06.191][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.192][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.193][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:43:06.193][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-06 20:43:06.193][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-06 20:43:06.193][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-06 20:43:06.193][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-06 20:43:06.194][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:06.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.195][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.196][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:06.197][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.198][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.199][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.200][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.201][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:06.202][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:06.203][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.204][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.205][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-06 20:43:06.207][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.208][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-06 20:43:06.209][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.210][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:06.210][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.211][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.212][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.213][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.214][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-06 20:43:06.215][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:06.216][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.217][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-06 20:43:06.218][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:06.225][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.227][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.228][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.229][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:06.230][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.232][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:06.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.234][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.235][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.236][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:06.237][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:06.238][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.239][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.240][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-06 20:43:06.242][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.243][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-06 20:43:06.244][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.245][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:06.246][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.247][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.248][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.250][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.251][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-06 20:43:06.252][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:06.253][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.254][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-06 20:43:06.255][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:06.256][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.256][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.257][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.258][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:06.259][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.260][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.261][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:06.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.264][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.265][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.266][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:06.267][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:06.268][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.269][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.270][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:43:06.271][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.355][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-06 20:43:06.356][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-06 20:43:06.357][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-06 20:43:06.359][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-06 20:43:06.360][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-06 20:43:06.361][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-06 20:43:06.363][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-06 20:43:06.364][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-06 20:43:06.365][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-06 20:43:06.367][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-06 20:43:06.368][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-06 20:43:06.370][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-06 20:43:06.371][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-06 20:43:06.372][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-06 20:43:06.373][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-06 20:43:06.375][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-06 20:43:06.376][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-06 20:43:06.378][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-06 20:43:06.379][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-06 20:43:06.380][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-06 20:43:06.382][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-06 20:43:06.383][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-06 20:43:06.384][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-06 20:43:06.386][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-06 20:43:06.387][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-06 20:43:06.388][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-06 20:43:06.390][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-06 20:43:06.391][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-06 20:43:06.393][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-06 20:43:06.395][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-06 20:43:06.396][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-06 20:43:06.398][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-06 20:43:06.399][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-06 20:43:06.401][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-06 20:43:06.402][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-06 20:43:06.404][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-06 20:43:06.405][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-06 20:43:06.407][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-06 20:43:06.408][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-06 20:43:06.410][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-06 20:43:06.411][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-06 20:43:06.412][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-06 20:43:06.414][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-06 20:43:06.415][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-06 20:43:06.416][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-06 20:43:06.417][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-06 20:43:06.419][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-06 20:43:06.420][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-06 20:43:06.422][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-06 20:43:06.423][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-06 20:43:06.424][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-06 20:43:06.426][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-06 20:43:06.427][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-06 20:43:06.428][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-06 20:43:06.430][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-06 20:43:06.431][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-06 20:43:06.432][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-06 20:43:06.438][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-06 20:43:06.440][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-06 20:43:06.441][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-06 20:43:06.443][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-06 20:43:06.444][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-06 20:43:06.445][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-06 20:43:06.447][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-06 20:43:06.448][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-06 20:43:06.449][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-06 20:43:06.450][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-06 20:43:06.452][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-06 20:43:06.453][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-06 20:43:06.454][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-06 20:43:06.455][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-06 20:43:06.457][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-06 20:43:06.458][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-06 20:43:06.459][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-06 20:43:06.460][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-06 20:43:06.468][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-06 20:43:06.471][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-06 20:43:06.472][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-06 20:43:06.474][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-06 20:43:06.476][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-06 20:43:06.477][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-06 20:43:06.479][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-06 20:43:06.480][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-06 20:43:06.482][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-06 20:43:06.484][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-06 20:43:06.485][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:43:06.486][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.488][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:06.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:06.617][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-06 20:43:06.618][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:06.621][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.621][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.622][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:06.624][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.625][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-06 20:43:06.626][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.627][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.628][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-06 20:43:06.629][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:06.630][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.631][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-06 20:43:06.632][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-06 20:43:06.633][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-06 20:43:06.634][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:06.635][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:43:06.635][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-06 20:43:06.635][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-06 20:43:06.636][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-06 20:43:06.636][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.637][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.638][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:06.639][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:06.640][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:06.641][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:06.642][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-06 20:43:06.642][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-06 20:43:06.643][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:06.643][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:06.644][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:06.645][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:06.646][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-06 20:43:06.648][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-06 20:43:06.649][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-06 20:43:06.651][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-06 20:43:06.652][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-06 20:43:06.656][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:06.657][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-06 20:43:06.658][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:06.659][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:43:06.660][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:06.661][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:06.663][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-06 20:43:06.663][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-06 20:43:06.664][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-06 20:43:06.664][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-06 20:43:06.665][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:06.666][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:06.673][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-06 20:43:06.674][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-06 20:43:06.675][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:06.676][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:43:06.677][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:06.678][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:06.680][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:43:06.681][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:06.682][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-06 20:43:06.683][biodb::testThat]
biodb.INFO [2025-03-06 20:43:06.684][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-06 20:43:06.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:06.686][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:06.689][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:06.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:06.692][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:43:06.694][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:06.694][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:43:06.696][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:43:06.697][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:43:06.697][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:43:06.698][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:43:06.701][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-06 20:43:06.706][biodb::testThat]
biodb.INFO [2025-03-06 20:43:06.707][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-06 20:43:06.708][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:06.709][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:06.710][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-06 20:43:06.711][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-06 20:43:06.713][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:06.714][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-06 20:43:06.716][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-06 20:43:06.717][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-06 20:43:06.718][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-06 20:43:06.719][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-06 20:43:06.721][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:43:06.722][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:43:06.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:06.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:06.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:06.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:06.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:06.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:06.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:06.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:06.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:06.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:06.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:06.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.742][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:06.743][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:06.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.750][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.751][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.753][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.754][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.758][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.759][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.769][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.774][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.779][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:06.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:06.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.789][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:06.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:06.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:06.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.802][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.803][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.805][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.810][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.811][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:06.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:06.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:06.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:06.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:06.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:06.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:06.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:06.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:06.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.848][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:06.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:06.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.851][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:06.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.855][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:06.856][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:06.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.859][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:06.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:06.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:06.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:06.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:06.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:06.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.871][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:43:06.872][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:43:06.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.899][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.906][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:06.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:06.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:06.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.986][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:06.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:06.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:06.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:06.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:07.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:07.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.078][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:07.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:07.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.101][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:43:07.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:43:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:07.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:07.177][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-06 20:43:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-06 20:43:07.200][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-06 20:43:07.201][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-06 20:43:07.202][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-06 20:43:07.202][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-06 20:43:07.203][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.205][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.207][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-06 20:43:07.211][biodb::testContext]
biodb.INFO [2025-03-06 20:43:07.212][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:43:07.213][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-06 20:43:07.214][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-06 20:43:07.215][biodb::testContext]
biodb.INFO [2025-03-06 20:43:07.219][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-06 20:43:07.221][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-03-06 20:43:07.224][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:43:07.225][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-06 20:43:07.226][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-06 20:43:07.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.230][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-06 20:43:07.231][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-06 20:43:07.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.234][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-06 20:43:07.235][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-06 20:43:07.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.239][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-06 20:43:07.240][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-06 20:43:07.241][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-06 20:43:07.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.244][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-06 20:43:07.245][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-06 20:43:07.246][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-06 20:43:07.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.249][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-06 20:43:07.250][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-06 20:43:07.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.254][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-06 20:43:07.255][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-06 20:43:07.256][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-06 20:43:07.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.259][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-06 20:43:07.260][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-06 20:43:07.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.263][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-06 20:43:07.264][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-06 20:43:07.265][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-06 20:43:07.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.269][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-06 20:43:07.270][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-06 20:43:07.270][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-06 20:43:07.271][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-06 20:43:07.272][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-06 20:43:07.273][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-06 20:43:07.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.277][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-06 20:43:07.278][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-06 20:43:07.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.281][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-06 20:43:07.282][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-06 20:43:07.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.286][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-06 20:43:07.287][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-06 20:43:07.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.303][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-06 20:43:07.304][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-06 20:43:07.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.308][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-06 20:43:07.309][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-06 20:43:07.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.312][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-06 20:43:07.313][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-06 20:43:07.317][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-06 20:43:07.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.320][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-06 20:43:07.321][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-06 20:43:07.322][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-06 20:43:07.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.326][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-06 20:43:07.328][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.329][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-06 20:43:07.330][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:07.332][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.333][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.334][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.335][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.336][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-06 20:43:07.336][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:07.337][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.338][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-06 20:43:07.339][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:07.340][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.341][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.342][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:43:07.342][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-06 20:43:07.342][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-06 20:43:07.342][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-06 20:43:07.342][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-06 20:43:07.343][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:07.344][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.345][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.346][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:07.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.347][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.348][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.349][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.350][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:07.351][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:07.352][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.353][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.354][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-06 20:43:07.356][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.357][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-06 20:43:07.358][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.359][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:07.360][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.361][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.362][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.362][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.363][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-06 20:43:07.364][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:07.365][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.366][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-06 20:43:07.367][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:07.368][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.369][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.370][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:43:07.370][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-06 20:43:07.370][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-06 20:43:07.370][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-06 20:43:07.370][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-06 20:43:07.371][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:07.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.373][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:07.374][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.376][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.377][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.378][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:07.379][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:07.380][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.380][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.382][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-06 20:43:07.383][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.384][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-06 20:43:07.385][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.386][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:07.387][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.388][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.389][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.390][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.391][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-06 20:43:07.392][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:07.393][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.394][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-06 20:43:07.394][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:07.395][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.396][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.397][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.403][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:07.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.405][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.406][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:07.407][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.408][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.408][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.409][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.410][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:07.411][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:07.412][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.413][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.414][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-06 20:43:07.416][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.416][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-06 20:43:07.417][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.418][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:07.419][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.420][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.421][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.422][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.423][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-06 20:43:07.424][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:07.425][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.426][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-06 20:43:07.426][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:07.427][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.428][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.429][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.430][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-06 20:43:07.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.432][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.433][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:07.434][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.434][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.435][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.436][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.437][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:07.438][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:07.439][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.440][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.441][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:43:07.442][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.518][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-06 20:43:07.519][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-06 20:43:07.520][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-06 20:43:07.522][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-06 20:43:07.523][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-06 20:43:07.524][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-06 20:43:07.526][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-06 20:43:07.527][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-06 20:43:07.528][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-06 20:43:07.530][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-06 20:43:07.531][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-06 20:43:07.532][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-06 20:43:07.534][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-06 20:43:07.535][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-06 20:43:07.536][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-06 20:43:07.538][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-06 20:43:07.539][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-06 20:43:07.540][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-06 20:43:07.541][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-06 20:43:07.543][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-06 20:43:07.544][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-06 20:43:07.545][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-06 20:43:07.547][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-06 20:43:07.548][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-06 20:43:07.549][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-06 20:43:07.550][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-06 20:43:07.552][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-06 20:43:07.553][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-06 20:43:07.554][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-06 20:43:07.556][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-06 20:43:07.557][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-06 20:43:07.558][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-06 20:43:07.559][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-06 20:43:07.561][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-06 20:43:07.562][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-06 20:43:07.563][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-06 20:43:07.565][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-06 20:43:07.566][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-06 20:43:07.567][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-06 20:43:07.568][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-06 20:43:07.570][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-06 20:43:07.571][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-06 20:43:07.572][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-06 20:43:07.573][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-06 20:43:07.575][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-06 20:43:07.576][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-06 20:43:07.577][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-06 20:43:07.579][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-06 20:43:07.580][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-06 20:43:07.581][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-06 20:43:07.583][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-06 20:43:07.584][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-06 20:43:07.585][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-06 20:43:07.586][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-06 20:43:07.592][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-06 20:43:07.594][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-06 20:43:07.595][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-06 20:43:07.597][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-06 20:43:07.598][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-06 20:43:07.599][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-06 20:43:07.600][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-06 20:43:07.602][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-06 20:43:07.603][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-06 20:43:07.604][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-06 20:43:07.605][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-06 20:43:07.606][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-06 20:43:07.608][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-06 20:43:07.609][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-06 20:43:07.610][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-06 20:43:07.611][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-06 20:43:07.613][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-06 20:43:07.614][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-06 20:43:07.615][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-06 20:43:07.617][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-06 20:43:07.618][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-06 20:43:07.619][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-06 20:43:07.621][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-06 20:43:07.622][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-06 20:43:07.623][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-06 20:43:07.625][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-06 20:43:07.626][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-06 20:43:07.627][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-06 20:43:07.628][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-06 20:43:07.630][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-06 20:43:07.631][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-06 20:43:07.632][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-06 20:43:07.633][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.635][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-06 20:43:07.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:07.741][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-06 20:43:07.742][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:07.744][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.745][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.746][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.747][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-06 20:43:07.748][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.749][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-06 20:43:07.750][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.751][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.752][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-06 20:43:07.752][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-06 20:43:07.753][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.754][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-06 20:43:07.755][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-06 20:43:07.756][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-06 20:43:07.757][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-06 20:43:07.758][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-06 20:43:07.758][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-06 20:43:07.758][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-06 20:43:07.759][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-06 20:43:07.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.762][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-06 20:43:07.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-06 20:43:07.763][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-06 20:43:07.764][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-06 20:43:07.765][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-06 20:43:07.765][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-06 20:43:07.766][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:07.767][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:07.768][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-06 20:43:07.769][self$setPropertyValue]
biodb.DEBUG[2025-03-06 20:43:07.770][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-06 20:43:07.771][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-06 20:43:07.773][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-06 20:43:07.774][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-06 20:43:07.776][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-06 20:43:07.783][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:07.784][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-06 20:43:07.785][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:07.787][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:43:07.788][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:07.789][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:07.790][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-06 20:43:07.791][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-06 20:43:07.792][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-06 20:43:07.792][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-06 20:43:07.793][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-06 20:43:07.793][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-06 20:43:07.794][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-06 20:43:07.795][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-06 20:43:07.796][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-06 20:43:07.797][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:43:07.798][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:07.799][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:07.801][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-06 20:43:07.802][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-06 20:43:07.802][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-06 20:43:07.804][biodb::testThat]
biodb.INFO [2025-03-06 20:43:07.805][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-06 20:43:07.806][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-06 20:43:07.806][biodb::testThat]
biodb.DEBUG[2025-03-06 20:43:07.808][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-06 20:43:07.809][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-06 20:43:07.810][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-06 20:43:07.813][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:07.814][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:07.816][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:43:07.817][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:07.818][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:43:07.819][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:43:07.820][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:43:07.821][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:43:07.822][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:43:07.823][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:43:07.824][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-06 20:43:07.825][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-06 20:43:07.826][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-06 20:43:07.828][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:07.829][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-06 20:43:07.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-06 20:43:07.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-06 20:43:07.834][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-06 20:43:07.835][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-06 20:43:07.836][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:43:07.837][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:43:07.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:07.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:07.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:07.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:07.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:07.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:07.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:07.851][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:07.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.859][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.860][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.862][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.867][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:07.868][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:07.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.874][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:07.875][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:07.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.877][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:07.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:07.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.896][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:07.897][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:07.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:07.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:07.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.919][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:07.920][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:07.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.922][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:07.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.927][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:07.928][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:07.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.930][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:07.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:07.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:07.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.945][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.961][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.966][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.969][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:07.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:07.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.974][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:07.975][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:07.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.976][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.978][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:07.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:07.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:07.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:07.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:07.996][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:07.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:07.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.001][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:43:08.002][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.005][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:43:08.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.021][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.028][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.032][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.036][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.210][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:43:08.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:43:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.270][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.281][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:08.313][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-06 20:43:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.321][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:08.329][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:43:08.330][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:43:08.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:08.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:08.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:08.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:08.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:08.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:08.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:08.341][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-06 20:43:08.342][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-06 20:43:08.343][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.345][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-06 20:43:08.347][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-06 20:43:08.348][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-06 20:43:08.349][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-06 20:43:08.350][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-06 20:43:08.352][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-06 20:43:08.353][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-06 20:43:08.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:08.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:08.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:08.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:08.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:08.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:08.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:08.367][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.375][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.376][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.378][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.383][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.384][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.386][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.391][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.393][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.394][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.408][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.414][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.416][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.425][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.432][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.438][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.439][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.446][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.447][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.449][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.458][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.474][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.483][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.491][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.497][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.498][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.500][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.501][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.508][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.514][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:43:08.515][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.517][ef$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.519][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-06 20:43:08.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.544][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-06 20:43:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.555][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.559][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-06 20:43:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-06 20:43:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-06 20:43:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-06 20:43:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-06 20:43:08.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-06 20:43:08.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.627][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-06 20:43:08.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-06 20:43:08.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-06 20:43:08.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-06 20:43:08.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.686][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-06 20:43:08.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-06 20:43:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-06 20:43:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.729][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-06 20:43:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-06 20:43:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-06 20:43:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:43:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.773][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-06 20:43:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-06 20:43:08.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-06 20:43:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-06 20:43:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-06 20:43:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-06 20:43:08.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-06 20:43:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:08.836][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-06 20:43:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.850][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:08.858][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:43:08.859][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:43:08.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:08.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:08.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:08.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:08.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:08.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:08.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:08.875][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-06 20:43:08.876][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-06 20:43:08.876][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-06 20:43:08.878][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.880][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.881][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:43:08.882][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.883][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:43:08.885][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:43:08.886][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:43:08.887][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:43:08.888][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:43:08.889][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:43:08.889][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-06 20:43:08.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.907][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.910][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:08.918][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:43:08.919][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:43:08.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:08.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:08.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:08.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:08.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:08.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:08.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.938][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.942][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:08.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:08.964][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-06 20:43:08.965][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:43:08.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:08.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:08.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:08.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:08.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:08.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:08.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-06 20:43:08.980][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-06 20:43:08.981][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-06 20:43:08.982][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-06 20:43:08.984][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.985][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.986][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-06 20:43:08.988][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-06 20:43:08.989][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-06 20:43:08.990][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-06 20:43:08.991][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-06 20:43:08.992][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-06 20:43:08.993][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-06 20:43:08.994][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-06 20:43:08.995][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-06 20:43:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.000][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.004][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:09.023][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-06 20:43:09.024][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-06 20:43:09.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:09.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:09.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:09.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:09.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:09.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:09.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-06 20:43:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.051][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-06 20:43:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-06 20:43:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-06 20:43:09.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-06 20:43:09.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-06 20:43:09.071][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-06 20:43:09.072][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-06 20:43:09.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-06 20:43:09.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:09.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:09.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:09.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:09.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:09.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-06 20:43:09.090][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-06 20:43:09.091][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-06 20:43:09.092][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-06 20:43:09.093][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-06 20:43:09.094][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-06 20:43:09.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-06 20:43:09.096][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-06 20:43:09.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-06 20:43:09.098][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-06 20:43:09.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.531 0.334 29.010