Pierrick Roger
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_20 |
| git_last_commit: e6b963e |
| git_last_commit_date: 2024-10-29 11:04:35 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:29 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.12.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.12.0.tar.gz |
| StartedAt: 2025-03-31 23:22:02 -0400 (Mon, 31 Mar 2025) |
| EndedAt: 2025-03-31 23:28:07 -0400 (Mon, 31 Mar 2025) |
| EllapsedTime: 365.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.31 2.86 229.5
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28 ucrt) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-03-31 23:27:11.031][biodb::testContext]
biodb.INFO [2025-03-31 23:27:11.034][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:11.036][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-31 23:27:11.037][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:11.039][biodb::testContext]
biodb.INFO [2025-03-31 23:27:11.047][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:11.050][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:11.073][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:11.075][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:27:11.076][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:27:11.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.081][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:27:11.099][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:27:11.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.104][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:27:11.106][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:27:11.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.110][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:27:11.112][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:27:11.113][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:27:11.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.118][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:27:11.119][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:27:11.121][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:27:11.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.126][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:27:11.127][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:27:11.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.132][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:27:11.133][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:27:11.135][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:27:11.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.140][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:27:11.141][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:27:11.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.146][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:27:11.147][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:27:11.149][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:27:11.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.154][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:11.155][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:27:11.156][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:27:11.158][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:27:11.159][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:27:11.161][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:27:11.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.166][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:27:11.167][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:27:11.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.172][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:27:11.174][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:27:11.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.179][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:27:11.181][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:27:11.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.186][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:27:11.187][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:27:11.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.192][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:27:11.193][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:27:11.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.198][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:11.200][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:27:11.204][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:27:11.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.209][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:27:11.210][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:27:11.211][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:27:11.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.219][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:27:11.251][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.267][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:27:11.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.277][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:11.278][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.279][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.280][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.282][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.283][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:11.285][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:11.286][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.287][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:27:11.289][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:11.290][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.291][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.293][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:11.293][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:11.293][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:11.293][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:11.293][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:11.294][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:11.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.297][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.298][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:11.299][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.300][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.301][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.303][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.304][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:11.305][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:11.306][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.308][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.309][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:27:11.311][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.313][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:11.314][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.316][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:11.317][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.318][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.320][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.321][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.322][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:11.324][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:11.325][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.327][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:27:11.328][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:11.329][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.330][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.332][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:11.332][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:11.332][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:11.332][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:11.332][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:11.333][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:11.334][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.337][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:11.338][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.340][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.342][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:11.344][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:11.345][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.346][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.348][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:27:11.350][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.351][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:27:11.353][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.354][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:11.355][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.356][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.358][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.359][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.360][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:11.362][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:11.363][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.364][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:27:11.365][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:11.367][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.368][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.369][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.370][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:11.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.374][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:11.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.378][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.379][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.380][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:11.381][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:11.382][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.384][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.385][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:27:11.387][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.388][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:11.390][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.391][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:11.392][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.393][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.395][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.396][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.397][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:11.399][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:11.400][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.401][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:27:11.402][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:11.404][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.405][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.406][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.407][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:11.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.410][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.411][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:11.412][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.413][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.415][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.416][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.417][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:11.418][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:11.419][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.421][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:11.424][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:11.425][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.530][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:27:11.535][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:27:11.537][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:27:11.538][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:27:11.540][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:11.542][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:27:11.543][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:11.545][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:11.547][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:27:11.548][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:27:11.550][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:11.552][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:27:11.553][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:11.555][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:11.556][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:27:11.558][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:27:11.560][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:27:11.561][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:27:11.563][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:11.565][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:27:11.566][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:27:11.568][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:27:11.570][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:27:11.571][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:27:11.573][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:27:11.575][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:27:11.576][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:27:11.578][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:27:11.579][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:27:11.581][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:27:11.583][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:27:11.584][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:27:11.586][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:27:11.588][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:27:11.589][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:27:11.591][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:27:11.592][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:27:11.594][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:27:11.596][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:27:11.597][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:27:11.599][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:27:11.601][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:27:11.602][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:27:11.604][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:27:11.605][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:27:11.607][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:27:11.609][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:27:11.610][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:27:11.612][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:27:11.614][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:27:11.615][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:27:11.617][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:27:11.619][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:27:11.620][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:27:11.622][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:27:11.623][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:27:11.625][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:27:11.627][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:27:11.628][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:27:11.630][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:27:11.632][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:27:11.633][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:27:11.635][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:27:11.636][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:27:11.638][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:27:11.640][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:27:11.641][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:11.643][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:11.644][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:27:11.646][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:27:11.648][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:27:11.649][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:27:11.651][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:27:11.652][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:27:11.654][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:27:11.656][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:27:11.657][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:27:11.659][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:27:11.661][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:27:11.662][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:27:11.664][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:27:11.665][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:27:11.667][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:27:11.701][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:27:11.704][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:11.707][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:11.708][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.710][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:11.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:11.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:11.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:11.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:11.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:11.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:11.851][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:11.860][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:27:11.863][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.864][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.865][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.866][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:11.868][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.869][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.870][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.871][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:27:11.872][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:27:11.874][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:11.875][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.876][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:27:11.877][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:27:11.878][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:27:11.880][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:11.881][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:11.881][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:11.881][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:11.882][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:27:11.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.885][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:11.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:11.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:11.889][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:11.890][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:27:11.890][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:27:11.891][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:11.892][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:11.893][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:11.895][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:27:11.895][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:27:11.900][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:11.902][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:11.904][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:27:11.906][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:11.907][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:11.909][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:11.936][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:27:11.937][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:27:11.941][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:27:11.945][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:27:11.948][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:11.950][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:11.951][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:27:11.953][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:27:11.963][biodb::testThat]
biodb.INFO [2025-03-31 23:27:11.964][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-03-31 23:27:11.965][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:11.967][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:12.011][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-03-31 23:27:12.013][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:12.016][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:12.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:12.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:12.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:12.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:12.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:12.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:12.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:12.056][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.093][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.095][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.098][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.122][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.132][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:12.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:12.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.142][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.153][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.163][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.170][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:12.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.217][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:12.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.234][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.238][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.245][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:12.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.248][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:12.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:12.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.258][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:12.341][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-03-31 23:27:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:12.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:12.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:27:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:27:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:27:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:27:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-31 23:27:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-31 23:27:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-31 23:27:12.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-31 23:27:12.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.614][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.733][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.809][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.813][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:12.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.888][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.892][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.940][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.944][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.979][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:12.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:13.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:13.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.147][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.156][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:13.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.175][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.188][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:13.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:13.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.203][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:13.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.220][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.236][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.247][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-03-31 23:27:13.249][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.274][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.286][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.289][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:13.315][biodb::testThat]
biodb.INFO [2025-03-31 23:27:13.317][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-31 23:27:13.318][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:13.319][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:13.332][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-03-31 23:27:13.339][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:13.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-03-31 23:27:13.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:13.349][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-03-31 23:27:13.351][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:13.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:13.373][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:13.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:13.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:13.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:13.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:13.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:13.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:13.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:13.397][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.440][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:13.442][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:13.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:13.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:13.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:13.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.472][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.489][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:13.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:13.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:13.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.521][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:13.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:13.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.526][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.544][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.551][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:13.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:13.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.555][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:13.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:13.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.563][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:13.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:13.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:13.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:13.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:13.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:13.620][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-03-31 23:27:13.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-31 23:27:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-31 23:27:13.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-31 23:27:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-31 23:27:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-31 23:27:13.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-31 23:27:13.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:13.686][biodb::testThat]
biodb.INFO [2025-03-31 23:27:13.688][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-31 23:27:13.690][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:13.691][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:13.695][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.699][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:13.701][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-03-31 23:27:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:13.773][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-03-31 23:27:13.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:27:13.799][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:13.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:27:13.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:13.818][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:27:13.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:13.851][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:13.853][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:13.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:13.874][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:27:13.877][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-03-31 23:27:13.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:13.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.921][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:13.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:13.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.925][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:13.936][biodb::testThat]
biodb.INFO [2025-03-31 23:27:13.937][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-03-31 23:27:13.939][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:13.940][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:13.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:14.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:14.085][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:14.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:14.090][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:14.093][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-03-31 23:27:14.137][biodb::testThat]
biodb.INFO [2025-03-31 23:27:14.138][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-03-31 23:27:14.140][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:14.141][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:14.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-31 23:27:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-31 23:27:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-31 23:27:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-31 23:27:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:14.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:14.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:14.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:14.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-31 23:27:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-31 23:27:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-31 23:27:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:14.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-31 23:27:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-31 23:27:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:14.302][biodb::testThat]
biodb.INFO [2025-03-31 23:27:14.304][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-31 23:27:14.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:14.306][biodb::testThat]
biodb.INFO [2025-03-31 23:27:14.322][biodb::testThat]
biodb.INFO [2025-03-31 23:27:14.324][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-31 23:27:14.325][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:14.326][biodb::testThat]
biodb.INFO [2025-03-31 23:27:14.347][biodb::testThat]
biodb.INFO [2025-03-31 23:27:14.349][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-31 23:27:14.350][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:14.351][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:14.356][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-03-31 23:27:15.013][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-03-31 23:27:15.806][biodb::testThat]
biodb.INFO [2025-03-31 23:27:15.808][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-31 23:27:15.810][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:15.812][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:16.126][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-03-31 23:27:16.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:16.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:16.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.476][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:16.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:16.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.481][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:16.484][biodb::testThat]
biodb.INFO [2025-03-31 23:27:16.485][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-03-31 23:27:16.486][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:16.500][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:16.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:16.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:16.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:16.707][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:16.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:16.711][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:16.714][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:27:16.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:16.789][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:16.791][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:16.793][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:16.795][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-03-31 23:27:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:27:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:27:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:16.914][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:16.919][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:16.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:27:16.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:17.041][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:27:17.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:17.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:17.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:17.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:17.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:17.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:17.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:17.065][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-03-31 23:27:17.112][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:17.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-03-31 23:27:17.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:17.134][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-03-31 23:27:17.135][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:17.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:17.139][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:17.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:17.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:17.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:17.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:17.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:17.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:17.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:17.156][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.172][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:17.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:17.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.178][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.183][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:17.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:17.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:17.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:17.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:17.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:17.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.240][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:17.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:17.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:17.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:17.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.251][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.253][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:17.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.257][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:17.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:17.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:17.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.268][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:17.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:17.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:17.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:17.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.278][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.285][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:17.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:17.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:17.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:17.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:17.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:17.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:17.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:17.365][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-03-31 23:27:17.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:17.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:17.395][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:17.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:27:17.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:17.546][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:27:17.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:17.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:17.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:17.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:17.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:17.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:17.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:17.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:17.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:17.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:17.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:17.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:17.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:17.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:17.619][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-03-31 23:27:17.621][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:17.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-03-31 23:27:17.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:17.977][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-03-31 23:27:17.979][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:17.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:17.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:17.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:17.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:17.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:18.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:18.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:18.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:18.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:18.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.010][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.017][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:18.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:18.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.020][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:18.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:18.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.031][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:18.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:18.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:18.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:18.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.063][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:18.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.067][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.069][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:18.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.090][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:18.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:18.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.095][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:18.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:18.104][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:18.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.106][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:18.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:18.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.120][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:18.178][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-03-31 23:27:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:18.402][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:18.406][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:18.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:18.409][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:18.411][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:27:18.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:18.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:18.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:18.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:18.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:18.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:18.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:18.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:18.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:18.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:18.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:18.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:18.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:18.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:18.460][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-03-31 23:27:18.461][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:18.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-03-31 23:27:18.468][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:18.493][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-03-31 23:27:18.496][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:18.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:18.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:18.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:18.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:18.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:18.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:18.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:18.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:18.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:18.529][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.540][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:18.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:18.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.549][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:18.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:18.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:18.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:18.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.558][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.566][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:18.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:18.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.573][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:18.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.577][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.586][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:18.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:18.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:18.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.606][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:18.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:18.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.612][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.623][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:18.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:18.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.628][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:18.697][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-03-31 23:27:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:18.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:18.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:18.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:18.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:18.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:18.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:18.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:18.760][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-03-31 23:27:18.761][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:18.763][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-03-31 23:27:18.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:18.783][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-03-31 23:27:18.785][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:18.787][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:18.789][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:18.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:18.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:18.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:18.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:18.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:18.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:18.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:18.817][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:18.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:18.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.834][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:18.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:18.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.840][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:18.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:18.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.846][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:18.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.852][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:18.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:18.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.858][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.861][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:18.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.867][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:18.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.873][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.875][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:18.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:18.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.879][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:18.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.887][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:18.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:18.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.891][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.899][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:18.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:18.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.903][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:18.969][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-03-31 23:27:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:18.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:18.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:18.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:19.047][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-03-31 23:27:19.048][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:19.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-03-31 23:27:19.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:19.084][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-03-31 23:27:19.086][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:19.087][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:19.089][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:19.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:19.112][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.116][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.127][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.136][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.146][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.148][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.162][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.169][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:19.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:19.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.172][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:19.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:19.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:19.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:19.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.232][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-03-31 23:27:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:19.275][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-03-31 23:27:19.276][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:19.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-03-31 23:27:19.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:19.294][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-03-31 23:27:19.295][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:19.297][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:19.299][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:19.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:19.324][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.327][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.337][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.347][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.357][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.367][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.374][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.375][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.377][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.384][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.385][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.387][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.395][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.397][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.403][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.407][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.414][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:19.415][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:19.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:19.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:19.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:19.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:19.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:19.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:19.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.482][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-03-31 23:27:19.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:19.593][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-03-31 23:27:19.594][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:19.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-03-31 23:27:19.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:19.614][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-03-31 23:27:19.616][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:19.617][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:19.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:19.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:19.643][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.659][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.668][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.673][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.688][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.700][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.706][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.710][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.716][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.720][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.740][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.746][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:19.748][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:19.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:19.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:19.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:19.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:19.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:19.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:19.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.822][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-03-31 23:27:19.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:19.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:19.856][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-03-31 23:27:19.858][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:19.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-03-31 23:27:19.865][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:19.890][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-03-31 23:27:19.892][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:19.894][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:19.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:19.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:19.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:19.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:19.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:19.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:19.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:19.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:19.913][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.916][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.923][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.926][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:19.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.936][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:19.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.968][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.982][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.988][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.992][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:19.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.002][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.009][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.010][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.068][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-03-31 23:27:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:20.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:20.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:20.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:20.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:20.104][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-03-31 23:27:20.105][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:20.107][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-03-31 23:27:20.109][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:20.127][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-03-31 23:27:20.129][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:20.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:20.132][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:20.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:20.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:20.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:20.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:20.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:20.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.152][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.164][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:20.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:20.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:20.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:20.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:20.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:20.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.177][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:20.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:20.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:20.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:20.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.197][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:20.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:20.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.207][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.209][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:20.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.214][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:20.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.223][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:20.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:20.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.233][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:20.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.243][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.253][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.309][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-03-31 23:27:20.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:20.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:20.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:20.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:20.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:20.352][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-03-31 23:27:20.353][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:20.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-03-31 23:27:20.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:20.372][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-03-31 23:27:20.374][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:20.376][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:20.377][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:20.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:20.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:20.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:20.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:20.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:20.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.410][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:20.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:20.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.420][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:20.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.427][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:20.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:20.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.430][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:20.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:20.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:20.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:20.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.440][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.450][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.457][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:20.458][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:20.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.460][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.462][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:20.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.465][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.467][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.475][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.482][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:20.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:20.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.485][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:20.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:20.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.492][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.505][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.561][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-03-31 23:27:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:20.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:20.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:20.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:20.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:20.591][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-03-31 23:27:20.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:20.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-03-31 23:27:20.596][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:20.619][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-03-31 23:27:20.620][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:20.622][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:20.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:20.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:20.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:20.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:20.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:20.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:20.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.649][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.656][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:20.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:20.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:20.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:20.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:20.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:20.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.844][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:20.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:20.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.854][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:20.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.865][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.871][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:20.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:20.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.876][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:20.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.880][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.881][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.896][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:20.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:20.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.907][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:20.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:20.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.920][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:20.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:20.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:20.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.976][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-03-31 23:27:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:20.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:20.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:20.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:20.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:21.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:21.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:21.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:21.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:21.016][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-03-31 23:27:21.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:21.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-03-31 23:27:21.021][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:21.357][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-03-31 23:27:21.359][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:21.360][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:21.362][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:21.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:21.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:21.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:21.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:21.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:21.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:21.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:21.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.383][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:21.391][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:21.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.393][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:21.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:21.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:21.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.403][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:21.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:21.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:21.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:21.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.413][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:21.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.423][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:21.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:21.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.434][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:21.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.444][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.448][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:21.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:21.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.457][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:21.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.464][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:21.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:21.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.467][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:21.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:21.475][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:21.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.477][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:21.532][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-03-31 23:27:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:21.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:21.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:21.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:21.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:21.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:21.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:21.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:21.571][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-03-31 23:27:21.572][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:21.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-03-31 23:27:21.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:21.612][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-03-31 23:27:21.614][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:21.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:21.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:21.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:21.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:21.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:21.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:21.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:21.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:21.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:21.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.646][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:21.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:21.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:21.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:21.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:21.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:21.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:21.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.685][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:21.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:21.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.691][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:21.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.695][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.705][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:21.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:21.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.716][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:21.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.723][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:21.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:21.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.727][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:21.735][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:21.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.737][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:21.790][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-03-31 23:27:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:21.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:21.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:21.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:21.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:21.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:21.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:21.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:21.830][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-03-31 23:27:21.831][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:21.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-03-31 23:27:21.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:21.871][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-03-31 23:27:21.873][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:21.875][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:21.876][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:21.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:21.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:21.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:21.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:21.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:21.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:21.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:21.916][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.926][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:21.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:21.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:21.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:21.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.939][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:21.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:21.946][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:21.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:21.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:21.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:21.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.958][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:21.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.963][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:21.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:21.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.973][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.980][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:21.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:21.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:21.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:21.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.994][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:21.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:21.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:21.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.004][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.152][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-03-31 23:27:22.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:22.190][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-03-31 23:27:22.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:22.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-03-31 23:27:22.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:22.210][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-03-31 23:27:22.212][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:22.214][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:22.216][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:22.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:22.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.251][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:22.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:22.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.256][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:22.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.265][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:22.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:22.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:22.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:22.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:22.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:22.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:22.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:22.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.301][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:22.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.307][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.325][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:22.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:22.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:22.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:22.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.356][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.413][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-03-31 23:27:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:22.453][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-03-31 23:27:22.454][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:22.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-03-31 23:27:22.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:22.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-03-31 23:27:22.483][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:22.485][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:22.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:22.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:22.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.522][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.529][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:22.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:22.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.533][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.536][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:22.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:22.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:22.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.544][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:22.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:22.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:22.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:22.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:22.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:22.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:22.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:22.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.575][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:22.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.579][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:22.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:22.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:22.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:22.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:22.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.608][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.618][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.672][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-03-31 23:27:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:22.701][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-03-31 23:27:22.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:22.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-03-31 23:27:22.706][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:22.750][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-03-31 23:27:22.752][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:22.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:22.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:22.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:22.780][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.784][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.790][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:22.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:22.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.794][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:22.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:22.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.802][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:22.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:22.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.806][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:22.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:22.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.818][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:22.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:22.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:22.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.838][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.839][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:22.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.843][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.865][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:22.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:22.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:22.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.875][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:22.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:22.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.878][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:22.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:22.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.948][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-03-31 23:27:22.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:22.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:22.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:22.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:22.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:22.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:22.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:22.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:22.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:22.978][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-03-31 23:27:22.979][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:22.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-03-31 23:27:22.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:23.000][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-03-31 23:27:23.001][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:23.003][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:23.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:23.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:23.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.029][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.036][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.049][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.059][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.076][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.078][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.080][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.084][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.094][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.104][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.110][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.120][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.121][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:23.181][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-03-31 23:27:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:23.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:23.219][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-03-31 23:27:23.221][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:23.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-03-31 23:27:23.225][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:23.242][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-03-31 23:27:23.243][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:23.245][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:23.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:23.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:23.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.269][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.279][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.286][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.289][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.299][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.309][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.321][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.324][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.326][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.335][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.342][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.346][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.366][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.372][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.388][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:23.456][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-03-31 23:27:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:23.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:23.498][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-03-31 23:27:23.500][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:23.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-03-31 23:27:23.506][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:23.525][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-03-31 23:27:23.526][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:23.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:23.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:23.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:23.550][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.553][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.559][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.563][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.573][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.602][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.604][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.617][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.623][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.628][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.639][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.655][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:23.716][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-03-31 23:27:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:23.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:23.773][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-03-31 23:27:23.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:23.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-03-31 23:27:23.784][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:23.799][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-03-31 23:27:23.800][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:23.802][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:23.803][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:23.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:23.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:23.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:23.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:23.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:23.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:23.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:23.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.839][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.847][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.853][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:23.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.884][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:23.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:23.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.902][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:23.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.907][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:23.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:23.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.931][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.938][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:23.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:24.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:24.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.027][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-03-31 23:27:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:24.090][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:24.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:24.093][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:24.095][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:27:24.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:24.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:24.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:24.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:24.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:24.913][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:24.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:24.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-03-31 23:27:24.924][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:24.938][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-03-31 23:27:24.942][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:24.946][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:24.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-03-31 23:27:24.949][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:24.965][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-03-31 23:27:24.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:24.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:24.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:24.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:24.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:24.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:24.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:24.985][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-03-31 23:27:24.987][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:24.989][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-03-31 23:27:24.991][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:25.020][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-03-31 23:27:25.022][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:25.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:25.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:25.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.067][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:25.069][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:25.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:25.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.078][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:25.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:25.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.081][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.094][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:25.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:25.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.097][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:25.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:25.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:25.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.124][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:25.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:25.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.128][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.129][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:25.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.136][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.144][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:25.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:25.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.147][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:25.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:25.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.157][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:25.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:25.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.167][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.219][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-03-31 23:27:25.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:25.275][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-03-31 23:27:25.276][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:25.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-03-31 23:27:25.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:25.301][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-03-31 23:27:25.303][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:25.304][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:25.306][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:25.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.330][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.336][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:25.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:25.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.339][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.346][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:25.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:25.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.349][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:25.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:25.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.359][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:25.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.369][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.376][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:25.377][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:25.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.379][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.381][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:25.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:25.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.384][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.394][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.401][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:25.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:25.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.406][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:25.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:25.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:25.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.418][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:25.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:25.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.429][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:25.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:25.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.494][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-03-31 23:27:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.559][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:25.563][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:25.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:25.566][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:25.568][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:27:25.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:25.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:25.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:25.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:25.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:25.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:25.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:25.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.487][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:26.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:26.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-03-31 23:27:26.495][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:26.497][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-03-31 23:27:26.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:26.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:26.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:26.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:26.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:26.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:26.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:26.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:27.282][biodb::testThat]
biodb.INFO [2025-03-31 23:27:27.284][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-03-31 23:27:27.285][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:27.286][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:27:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:27:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:27.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:27.341][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:27.342][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:27:27.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:27.346][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:27:27.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.400][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:27.406][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:27.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:27:27.411][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:27.414][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:27:27.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.505][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:27:27.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.532][private$selectFields]
biodb.TRACE[2025-03-31 23:27:27.533][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:27.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:27.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.540][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.545][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.552][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.553][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:27.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-31 23:27:27.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.611][private$selectFields]
biodb.TRACE[2025-03-31 23:27:27.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:27.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:27.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.622][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.630][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.634][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:27.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:27:27.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.676][private$selectFields]
biodb.TRACE[2025-03-31 23:27:27.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:27.678][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:27.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.689][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.691][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:27.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.696][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.697][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:27.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-31 23:27:27.714][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:27:27.715][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:27:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:27.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:27.819][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:27.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-31 23:27:27.823][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:27.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-31 23:27:27.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:27.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:27.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-31 23:27:27.843][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:27.847][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-31 23:27:27.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:27.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:27.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:27.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:27.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:27.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:27.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:27.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:27.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:27.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:28.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:28.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:28.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:28.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:28.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:28.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:28.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:28.958][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:27:28.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:28.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:28.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:28.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:28.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:28.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:28.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.003][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.019][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.025][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-31 23:27:29.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.108][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.117][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.122][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.133][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:27:29.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.180][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.194][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.199][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.207][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-31 23:27:29.225][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:27:29.226][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:27:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:29.261][biodb::testThat]
biodb.INFO [2025-03-31 23:27:29.263][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-03-31 23:27:29.264][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:29.265][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:27:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:27:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:29.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:29.316][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:29.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:27:29.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:29.321][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:27:29.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:29.356][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:29.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:27:29.360][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:29.362][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:27:29.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.447][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:27:29.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.473][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.481][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.486][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.488][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.493][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.494][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-31 23:27:29.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.535][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.543][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.547][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:27:29.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.598][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.607][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.611][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.614][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.620][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.621][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-31 23:27:29.639][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:27:29.641][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:27:29.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:29.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:29.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:29.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-31 23:27:29.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:29.703][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-31 23:27:29.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:29.711][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:29.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-31 23:27:29.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:29.723][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-31 23:27:29.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:29.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:29.827][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:27:29.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.854][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.863][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.868][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.875][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.876][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-31 23:27:29.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.930][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:29.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:29.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.938][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.952][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.954][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.970][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:27:29.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:29.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:29.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:29.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:29.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:29.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:29.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:29.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:29.998][private$selectFields]
biodb.TRACE[2025-03-31 23:27:29.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.006][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.011][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.019][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-31 23:27:30.037][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:27:30.038][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:27:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:30.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:30.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:30.067][biodb::testThat]
biodb.INFO [2025-03-31 23:27:30.068][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-03-31 23:27:30.070][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:30.071][biodb::testThat]
biodb.TRACE[2025-03-31 23:27:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-31 23:27:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-31 23:27:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:30.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:30.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:30.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-03-31 23:27:30.132][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:30.134][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-03-31 23:27:30.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:30.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:30.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-03-31 23:27:30.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:30.186][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-03-31 23:27:30.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:30.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.262][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:27:30.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.298][private$selectFields]
biodb.TRACE[2025-03-31 23:27:30.299][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.300][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.306][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.311][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.319][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-03-31 23:27:30.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.377][private$selectFields]
biodb.TRACE[2025-03-31 23:27:30.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.385][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.389][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.396][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.398][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:27:30.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.447][private$selectFields]
biodb.TRACE[2025-03-31 23:27:30.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.449][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.455][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.462][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.468][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-03-31 23:27:30.485][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:27:30.486][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:27:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:30.574][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:30.580][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:30.583][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-03-31 23:27:30.585][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:30.589][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-03-31 23:27:30.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:30.600][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:30.603][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-03-31 23:27:30.606][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:30.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-03-31 23:27:30.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:30.785][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-03-31 23:27:30.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.823][private$selectFields]
biodb.TRACE[2025-03-31 23:27:30.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.842][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.845][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.851][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-03-31 23:27:30.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.892][private$selectFields]
biodb.TRACE[2025-03-31 23:27:30.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.900][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.906][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.913][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-03-31 23:27:30.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:30.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:30.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:30.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:30.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:30.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:30.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.958][private$selectFields]
biodb.TRACE[2025-03-31 23:27:30.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-03-31 23:27:30.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-03-31 23:27:30.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.967][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.971][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-03-31 23:27:30.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-03-31 23:27:30.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:30.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-03-31 23:27:30.996][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-03-31 23:27:30.998][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-03-31 23:27:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-03-31 23:27:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:31.062][biodb::testThat]
biodb.INFO [2025-03-31 23:27:31.064][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-03-31 23:27:31.066][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:31.068][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:31.071][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-31 23:27:31.073][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:31.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-31 23:27:31.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:31.105][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2025-03-31 23:27:31.107][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:31.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:31.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:31.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:31.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:31.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:31.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:31.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:31.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:31.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:31.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.138][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:31.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:31.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.148][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:31.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:31.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.156][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:31.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:31.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.165][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.173][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.177][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.181][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:31.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:31.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.186][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.192][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:31.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:31.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.196][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:31.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:31.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:31.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:31.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.206][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:31.257][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-03-31 23:27:31.258][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-31 23:27:31.299][biodb::testThat]
biodb.INFO [2025-03-31 23:27:31.301][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-31 23:27:31.302][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:31.303][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:31.322][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-03-31 23:27:31.324][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-03-31 23:27:31.325][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-03-31 23:27:31.327][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-03-31 23:27:31.329][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-03-31 23:27:31.369][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-03-31 23:27:31.371][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:31.373][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-03-31 23:27:31.374][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:31.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:31.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:31.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:31.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:31.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:31.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:31.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:31.395][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.401][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.408][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:31.410][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:31.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.412][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.413][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:31.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:31.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.417][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:31.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.422][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.424][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.427][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.433][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.434][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:31.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.438][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.449][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.450][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:31.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.454][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.456][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:31.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:31.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:31.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:31.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.466][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:31.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:31.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:31.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:31.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:31.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:31.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:31.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:31.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.551][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.561][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:31.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:31.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.566][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.576][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:31.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:31.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.582][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:31.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:31.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.627][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.633][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:31.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:31.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.637][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.647][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:31.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:31.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.656][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:31.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:31.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.666][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:31.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:31.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:31.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:31.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:31.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:31.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:31.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:31.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:31.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:31.737][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.741][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.747][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:31.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:31.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.751][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:31.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:31.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.757][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:31.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:31.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.761][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:31.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:31.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:31.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.771][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:31.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.781][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:31.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.791][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.798][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:31.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:31.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.801][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.803][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.812][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.818][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:31.819][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.822][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:31.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.828][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:31.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:31.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.832][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:31.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:31.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.842][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:31.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:31.926][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-03-31 23:27:31.927][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-31 23:27:31.934][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-03-31 23:27:31.963][biodb::testThat]
biodb.INFO [2025-03-31 23:27:31.964][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-03-31 23:27:31.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:31.967][biodb::testThat]
biodb.INFO [2025-03-31 23:27:31.994][biodb::testThat]
biodb.INFO [2025-03-31 23:27:31.995][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-03-31 23:27:31.996][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:31.997][biodb::testThat]
biodb.INFO [2025-03-31 23:27:32.070][biodb::testThat]
biodb.INFO [2025-03-31 23:27:32.071][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-03-31 23:27:32.072][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:32.073][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:32.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:32.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:32.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2025-03-31 23:27:32.085][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:32.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2025-03-31 23:27:32.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:32.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:32.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:32.757][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:32.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:32.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:32.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:32.763][ef$get] fields variable is a list.
biodb.INFO [2025-03-31 23:27:32.766][biodb::testThat]
biodb.INFO [2025-03-31 23:27:32.768][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2025-03-31 23:27:32.769][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:32.771][biodb::testThat]
biodb.ERROR[2025-03-31 23:27:32.791][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-03-31 23:27:32.813][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-03-31 23:27:32.864][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:27:32.866][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:27:32.867][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:27:32.869][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:27:32.870][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:32.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:32.873][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:32.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:32.876][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:27:32.898][biodb::testContext]
biodb.INFO [2025-03-31 23:27:32.900][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:32.901][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-03-31 23:27:32.903][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:32.904][biodb::testContext]
biodb.INFO [2025-03-31 23:27:32.908][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:32.911][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:32.919][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:32.920][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:27:32.922][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:27:32.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.928][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:27:32.929][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:27:32.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.936][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:27:32.938][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:27:32.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.943][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:27:32.945][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:27:32.947][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:27:32.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.953][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:27:32.955][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:27:32.956][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:27:32.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.962][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:27:32.965][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:27:32.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.986][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:27:32.987][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:27:32.989][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:27:32.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:32.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:32.994][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:27:32.996][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:27:32.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:32.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.002][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:27:33.003][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:27:33.005][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:27:33.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.010][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:33.013][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:27:33.014][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:27:33.016][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:27:33.017][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:27:33.019][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:27:33.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.024][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:27:33.026][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:27:33.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.045][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:27:33.047][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:27:33.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.052][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:27:33.054][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:27:33.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.059][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:27:33.061][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:27:33.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.067][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:27:33.069][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:27:33.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.074][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:33.076][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:27:33.081][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:27:33.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.086][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:27:33.088][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:27:33.090][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:27:33.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.096][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:27:33.098][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.100][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:27:33.101][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:33.105][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.108][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.109][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.112][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:33.113][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:33.115][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.116][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:27:33.118][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:33.120][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.121][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.123][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:33.123][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:33.123][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:33.123][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:33.123][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:33.125][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:33.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.129][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:33.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.134][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.135][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.137][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:33.138][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:33.140][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.141][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.143][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:27:33.146][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.147][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:33.149][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.150][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:33.152][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.153][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.155][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.157][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.158][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:33.160][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:33.161][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.163][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:27:33.165][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:33.166][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.168][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.169][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:33.169][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:33.169][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:33.169][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:33.169][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:33.171][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:33.172][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.175][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:33.177][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.179][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.180][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.182][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.183][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:33.185][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:33.186][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.188][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.190][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:27:33.192][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.194][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:27:33.195][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.197][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:33.199][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.200][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.202][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.203][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.205][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:33.207][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:33.208][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.210][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:27:33.211][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:33.213][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.214][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.216][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.218][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:33.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.222][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:33.224][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.225][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.227][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.228][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.230][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:33.231][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:33.233][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.235][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.237][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:27:33.248][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.250][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:33.251][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.253][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:33.254][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.256][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.257][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.261][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:33.262][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:33.264][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.265][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:27:33.267][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:33.268][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.270][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:33.271][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.273][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:33.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.278][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:33.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:33.280][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:33.282][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:33.283][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.285][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:33.286][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:33.288][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:33.289][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:33.291][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:33.293][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.436][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:27:33.438][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:27:33.440][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:27:33.442][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:27:33.445][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:33.447][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:27:33.449][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:33.451][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:33.453][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:27:33.455][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:27:33.457][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:33.459][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:27:33.461][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:33.463][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:33.465][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:27:33.467][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:27:33.470][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:27:33.472][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:27:33.474][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:33.476][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:27:33.478][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:27:33.480][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:27:33.482][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:27:33.484][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:27:33.486][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:27:33.488][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:27:33.490][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:27:33.492][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:27:33.494][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:27:33.496][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:27:33.499][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:27:33.501][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:27:33.503][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:27:33.505][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:27:33.507][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:27:33.509][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:27:33.511][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:27:33.513][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:27:33.515][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:27:33.517][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:27:33.519][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:27:33.521][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:27:33.523][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:27:33.525][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:27:33.528][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:27:33.530][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:27:33.532][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:27:33.534][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:27:33.536][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:27:33.538][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:27:33.540][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:27:33.542][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:27:33.544][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:27:33.546][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:27:33.548][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:27:33.550][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:27:33.552][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:27:33.554][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:27:33.556][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:27:33.558][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:27:33.561][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:27:33.563][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:27:33.565][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:27:33.567][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:27:33.569][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:27:33.571][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:27:33.573][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:33.575][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:33.577][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:27:33.579][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:27:33.581][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:27:33.583][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:27:33.585][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:27:33.587][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:27:33.589][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:27:33.591][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:27:33.593][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:27:33.595][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:27:33.597][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:27:33.599][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:27:33.602][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:27:33.604][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:27:33.606][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:27:33.608][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:27:33.611][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:33.613][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:33.615][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.618][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:33.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:33.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:33.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:33.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:33.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:33.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:33.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:35.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:35.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:35.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:35.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:35.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:35.659][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:35.662][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:27:35.664][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:35.666][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:27:35.667][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:35.669][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:35.671][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:35.672][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:35.674][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:35.675][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:27:35.677][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:27:35.678][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:35.680][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:35.681][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:27:35.683][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:27:35.685][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:27:35.686][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:35.688][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:35.688][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:35.688][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:35.689][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:27:35.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:35.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:35.694][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:35.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:35.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:35.698][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:35.699][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:27:35.699][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:27:35.701][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:35.702][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:35.704][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:35.705][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:27:35.705][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:27:35.707][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:35.710][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:35.712][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:27:35.714][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:35.716][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:35.718][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:35.723][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:27:35.725][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:27:35.727][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:27:35.729][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:27:35.731][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:35.733][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:35.735][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:27:35.736][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:27:35.739][biodb::testThat]
biodb.INFO [2025-03-31 23:27:35.741][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2025-03-31 23:27:35.742][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:35.744][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:35.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:27:35.756][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:35.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:27:35.761][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:35.764][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:27:35.770][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:35.777][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:35.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-31 23:27:35.782][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:36.677][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-31 23:27:36.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:36.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:36.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-31 23:27:36.724][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:36.750][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-31 23:27:36.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:36.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:36.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-31 23:27:36.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:36.832][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-31 23:27:36.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.855][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:36.858][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:36.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-31 23:27:36.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:36.865][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-31 23:27:36.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:36.931][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:36.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-03-31 23:27:36.935][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:36.937][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-03-31 23:27:36.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.960][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:36.966][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:36.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-03-31 23:27:36.971][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:36.974][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-03-31 23:27:36.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:36.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:36.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:36.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:36.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:36.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:36.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:36.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:37.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:37.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2025-03-31 23:27:37.008][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:39.621][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2025-03-31 23:27:39.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:39.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:39.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:39.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:39.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:39.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:27:39.647][biodb::testThat]
biodb.INFO [2025-03-31 23:27:39.649][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2025-03-31 23:27:39.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:39.651][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:39.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:39.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:39.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2025-03-31 23:27:39.663][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:39.706][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2025-03-31 23:27:39.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:39.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:39.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:39.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:39.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:39.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:39.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:39.746][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:39.748][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2025-03-31 23:27:39.750][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:39.885][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2025-03-31 23:27:39.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:39.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:39.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:39.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:39.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:39.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:27:39.910][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:27:39.911][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:27:39.913][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:27:39.914][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:27:39.915][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:39.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:39.917][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:39.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:39.920][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:27:39.926][biodb::testContext]
biodb.INFO [2025-03-31 23:27:39.928][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:39.929][biodb::testContext] Test context - Test web services
biodb.INFO [2025-03-31 23:27:39.930][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:39.931][biodb::testContext]
biodb.INFO [2025-03-31 23:27:39.934][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:39.937][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:39.943][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:39.945][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:27:39.947][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:27:39.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:39.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:39.952][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:27:39.953][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:27:39.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:39.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:39.958][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:27:39.959][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:27:39.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:39.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:39.989][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:27:39.991][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:27:39.993][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:27:39.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:39.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:39.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:39.998][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:27:39.999][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:27:40.000][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:27:40.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.005][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:27:40.007][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:27:40.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.011][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:27:40.013][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:27:40.014][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:27:40.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.019][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:27:40.020][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:27:40.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.025][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:27:40.026][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:27:40.027][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:27:40.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.032][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:40.033][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:27:40.034][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:27:40.036][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:27:40.037][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:27:40.038][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:27:40.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.043][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:27:40.044][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:27:40.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.049][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:27:40.050][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:27:40.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.055][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:27:40.056][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:27:40.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.061][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:27:40.062][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:27:40.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.066][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:27:40.068][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:27:40.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.072][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:40.074][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:27:40.077][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:27:40.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.082][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:27:40.084][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:27:40.086][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:27:40.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.091][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:27:40.093][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.095][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:27:40.096][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.097][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:40.099][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.100][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.101][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.102][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.104][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:40.105][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:40.106][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.107][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:27:40.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:40.110][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.111][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.113][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:40.113][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:40.113][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:40.113][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:40.113][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:40.114][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:40.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.118][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:40.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.122][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.124][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.125][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:40.126][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:40.127][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.129][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.130][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:27:40.132][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.134][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:40.135][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.136][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:40.137][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.139][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.140][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.141][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.143][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:40.144][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:40.145][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.146][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:27:40.148][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:40.149][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.150][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.151][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:40.151][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:40.151][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:40.151][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:40.151][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:40.153][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:40.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.155][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.156][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:40.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.159][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.160][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.161][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.162][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:40.164][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:40.165][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.166][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.168][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:27:40.170][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.172][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:27:40.174][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.176][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:40.178][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.180][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.182][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.184][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.186][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:40.188][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:40.190][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.192][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:27:40.194][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:40.196][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.198][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.199][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.201][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:40.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.205][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.206][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:40.208][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.210][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.212][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.214][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.216][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:40.217][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:40.218][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.219][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.221][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:27:40.223][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.224][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:40.225][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.227][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:40.228][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.229][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.230][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.232][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.233][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:40.234][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:40.236][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.237][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:27:40.238][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:40.239][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.241][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.242][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.243][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:40.245][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.246][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.247][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:40.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.251][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.252][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.253][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:40.254][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:40.256][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.257][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:40.259][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:40.260][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.373][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:27:40.374][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:27:40.376][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:27:40.378][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:27:40.380][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:40.381][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:27:40.383][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:40.385][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:40.386][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:27:40.388][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:27:40.389][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:40.391][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:27:40.393][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:40.394][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:40.396][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:27:40.398][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:27:40.399][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:27:40.401][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:27:40.403][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:40.405][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:27:40.406][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:27:40.408][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:27:40.410][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:27:40.412][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:27:40.413][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:27:40.415][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:27:40.417][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:27:40.419][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:27:40.422][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:27:40.424][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:27:40.427][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:27:40.430][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:27:40.432][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:27:40.435][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:27:40.438][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:27:40.440][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:27:40.443][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:27:40.446][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:27:40.448][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:27:40.451][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:27:40.453][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:27:40.456][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:27:40.459][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:27:40.471][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:27:40.475][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:27:40.478][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:27:40.481][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:27:40.484][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:27:40.486][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:27:40.489][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:27:40.491][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:27:40.494][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:27:40.497][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:27:40.499][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:27:40.502][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:27:40.504][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:27:40.507][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:27:40.510][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:27:40.512][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:27:40.515][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:27:40.518][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:27:40.520][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:27:40.523][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:27:40.526][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:27:40.529][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:27:40.532][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:27:40.534][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:40.537][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:40.540][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:27:40.543][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:27:40.545][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:27:40.548][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:27:40.551][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:27:40.553][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:27:40.556][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:27:40.559][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:27:40.561][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:27:40.564][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:27:40.567][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:27:40.569][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:27:40.572][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:27:40.574][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:27:40.577][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:27:40.580][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:27:40.583][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:40.585][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:40.587][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.591][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:40.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:40.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:40.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:40.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:40.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:40.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:40.755][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:40.757][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:27:40.759][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.761][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.762][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.763][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:40.765][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.767][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.769][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.771][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:27:40.773][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:27:40.775][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:40.778][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.780][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:27:40.782][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:27:40.784][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:27:40.786][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:40.787][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:40.787][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:40.787][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:40.789][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:27:40.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.792][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:40.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:40.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:40.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:40.797][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:27:40.797][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:27:40.798][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:40.799][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:40.800][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:40.802][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:27:40.802][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:27:40.803][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:40.805][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:40.807][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:27:40.809][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:40.810][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:40.812][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:40.816][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:27:40.817][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:27:40.818][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:27:40.820][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:27:40.822][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:40.823][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:40.825][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:27:40.826][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:27:40.828][biodb::testThat]
biodb.INFO [2025-03-31 23:27:40.829][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-03-31 23:27:40.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:40.832][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:40.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:27:40.840][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:40.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:27:40.844][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:40.846][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:27:40.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:40.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:40.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-03-31 23:27:40.858][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:41.228][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2025-03-31 23:27:41.243][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:27:41.245][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:27:41.246][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:27:41.247][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:27:41.248][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.251][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.253][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-31 23:27:41.259][biodb::testContext]
biodb.INFO [2025-03-31 23:27:41.261][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:41.262][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-03-31 23:27:41.263][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-31 23:27:41.264][biodb::testContext]
biodb.INFO [2025-03-31 23:27:41.267][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:41.270][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:41.275][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:41.276][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-31 23:27:41.278][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-31 23:27:41.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.282][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-31 23:27:41.284][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-31 23:27:41.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.288][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-31 23:27:41.290][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-31 23:27:41.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.294][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-31 23:27:41.296][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-31 23:27:41.297][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-31 23:27:41.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.301][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-31 23:27:41.303][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-31 23:27:41.304][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-31 23:27:41.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.309][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-31 23:27:41.310][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-31 23:27:41.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.315][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-31 23:27:41.316][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-31 23:27:41.317][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-31 23:27:41.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.322][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-31 23:27:41.323][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-31 23:27:41.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.328][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-31 23:27:41.329][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-31 23:27:41.330][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-31 23:27:41.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.335][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:41.336][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-31 23:27:41.337][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-31 23:27:41.339][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-31 23:27:41.340][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-31 23:27:41.341][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-31 23:27:41.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.346][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-31 23:27:41.347][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-31 23:27:41.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.352][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-31 23:27:41.353][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-31 23:27:41.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.366][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-31 23:27:41.367][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-31 23:27:41.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.372][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-31 23:27:41.374][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-31 23:27:41.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.381][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-31 23:27:41.383][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-31 23:27:41.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.391][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-31 23:27:41.392][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-31 23:27:41.396][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-31 23:27:41.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.401][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-31 23:27:41.402][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-31 23:27:41.403][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-31 23:27:41.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.408][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-31 23:27:41.410][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.411][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-31 23:27:41.413][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.414][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:41.415][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.416][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.417][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.419][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.420][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:41.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:41.422][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.423][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-31 23:27:41.425][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:41.426][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.427][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.428][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:41.428][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:41.428][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:41.428][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:41.428][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:41.430][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:41.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.432][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.433][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:41.434][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.436][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.438][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.439][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:41.440][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:41.441][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.442][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.444][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-31 23:27:41.446][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.447][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:41.448][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.449][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:41.451][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.452][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.453][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.454][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.456][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:41.457][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:41.458][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.459][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-31 23:27:41.460][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:41.462][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.463][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.464][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:41.464][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:41.464][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:41.464][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-31 23:27:41.464][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-31 23:27:41.465][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:41.467][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.468][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.469][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:41.470][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.471][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.473][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.474][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.475][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:41.476][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:41.477][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.478][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.480][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-31 23:27:41.482][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.483][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-31 23:27:41.484][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.485][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:41.487][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.488][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.489][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.490][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.491][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-31 23:27:41.493][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:41.494][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.495][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-31 23:27:41.496][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:41.498][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.499][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.500][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.501][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:41.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.504][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.505][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:41.506][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.507][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.508][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.510][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.511][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:41.512][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:41.514][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.515][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.516][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-31 23:27:41.518][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.519][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-31 23:27:41.521][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.522][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:41.523][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.524][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.525][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.527][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.528][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-31 23:27:41.529][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:41.531][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.532][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-31 23:27:41.533][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:41.534][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.536][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.537][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.538][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-31 23:27:41.539][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.541][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.542][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:41.543][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.545][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.547][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.548][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:41.549][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:41.550][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.551][self$setPropertyValue]
biodb.DEBUG[2025-03-31 23:27:41.553][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:41.554][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.653][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-31 23:27:41.654][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-31 23:27:41.656][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-31 23:27:41.658][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-31 23:27:41.659][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:41.661][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-31 23:27:41.663][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:41.664][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:41.666][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-31 23:27:41.667][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-31 23:27:41.669][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:41.671][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-31 23:27:41.672][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-31 23:27:41.674][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-31 23:27:41.675][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-31 23:27:41.677][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-31 23:27:41.679][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-31 23:27:41.680][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-31 23:27:41.682][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:41.683][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-31 23:27:41.685][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-31 23:27:41.687][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-31 23:27:41.688][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-31 23:27:41.690][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-31 23:27:41.692][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-31 23:27:41.693][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-31 23:27:41.695][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-31 23:27:41.696][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-31 23:27:41.698][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-31 23:27:41.700][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-31 23:27:41.701][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-31 23:27:41.703][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-31 23:27:41.704][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-31 23:27:41.706][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-31 23:27:41.708][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-31 23:27:41.709][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-31 23:27:41.711][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-31 23:27:41.713][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-31 23:27:41.714][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-31 23:27:41.716][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-31 23:27:41.717][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-31 23:27:41.719][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-31 23:27:41.721][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-31 23:27:41.722][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-31 23:27:41.724][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-31 23:27:41.726][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-31 23:27:41.727][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-31 23:27:41.729][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-31 23:27:41.730][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-31 23:27:41.732][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-31 23:27:41.734][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-31 23:27:41.735][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-31 23:27:41.737][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-31 23:27:41.738][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-31 23:27:41.740][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-31 23:27:41.741][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-31 23:27:41.743][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-31 23:27:41.745][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-31 23:27:41.746][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-31 23:27:41.748][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-31 23:27:41.750][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-31 23:27:41.751][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-31 23:27:41.753][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-31 23:27:41.755][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-31 23:27:41.756][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-31 23:27:41.758][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-31 23:27:41.759][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:41.761][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:41.763][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-31 23:27:41.765][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-31 23:27:41.767][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-31 23:27:41.770][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-31 23:27:41.773][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-31 23:27:41.776][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-31 23:27:41.778][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-31 23:27:41.793][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-31 23:27:41.795][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-31 23:27:41.797][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-31 23:27:41.798][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-31 23:27:41.800][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-31 23:27:41.802][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-31 23:27:41.803][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-31 23:27:41.805][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-31 23:27:41.807][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-31 23:27:41.809][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-03-31 23:27:41.810][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-31 23:27:41.811][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.814][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-31 23:27:41.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:41.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:41.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:41.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:41.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:41.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-31 23:27:41.953][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-03-31 23:27:41.955][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-03-31 23:27:41.957][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.958][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.959][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.961][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-31 23:27:41.962][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.963][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.964][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.966][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-03-31 23:27:41.967][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-31 23:27:41.968][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-31 23:27:41.969][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.970][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-03-31 23:27:41.972][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-03-31 23:27:41.973][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-03-31 23:27:41.974][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-31 23:27:41.976][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-31 23:27:41.976][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-31 23:27:41.976][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-31 23:27:41.977][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-31 23:27:41.978][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.979][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.980][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-31 23:27:41.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-31 23:27:41.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-31 23:27:41.984][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-31 23:27:41.985][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-03-31 23:27:41.985][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-03-31 23:27:41.986][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-31 23:27:41.987][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-31 23:27:41.988][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-31 23:27:41.990][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-03-31 23:27:41.990][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-03-31 23:27:41.991][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-31 23:27:41.993][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-31 23:27:41.995][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-03-31 23:27:41.996][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-31 23:27:41.998][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-31 23:27:42.000][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-31 23:27:42.003][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-03-31 23:27:42.005][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-03-31 23:27:42.006][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-03-31 23:27:42.008][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-03-31 23:27:42.009][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:42.011][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-31 23:27:42.012][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-03-31 23:27:42.013][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-03-31 23:27:42.015][biodb::testThat]
biodb.INFO [2025-03-31 23:27:42.017][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-03-31 23:27:42.018][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-31 23:27:42.019][biodb::testThat]
biodb.DEBUG[2025-03-31 23:27:42.023][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-03-31 23:27:42.028][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:42.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-03-31 23:27:42.031][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:42.034][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-03-31 23:27:42.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-03-31 23:27:42.041][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-03-31 23:27:42.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-03-31 23:27:42.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:42.047][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-03-31 23:27:42.052][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-03-31 23:27:42.053][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-03-31 23:27:42.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-03-31 23:27:42.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-31 23:27:42.079][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2025-03-31 23:27:42.081][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-03-31 23:27:42.083][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-03-31 23:27:42.086][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-03-31 23:27:42.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-31 23:27:42.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:42.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:42.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:42.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:42.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:42.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-31 23:27:42.110][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.114][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:42.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:42.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.126][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-03-31 23:27:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-03-31 23:27:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.133][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:42.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:42.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.137][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-31 23:27:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-31 23:27:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-31 23:27:42.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-31 23:27:42.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.147][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-31 23:27:42.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-31 23:27:42.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.153][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:42.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:42.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.159][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-31 23:27:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.166][ef$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:42.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:42.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.169][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-03-31 23:27:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-03-31 23:27:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:42.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:42.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.180][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-31 23:27:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.187][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:42.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:42.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.191][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-31 23:27:42.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-31 23:27:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:42.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:42.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-03-31 23:27:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-03-31 23:27:42.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.209][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:42.210][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.213][ef$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-31 23:27:42.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-31 23:27:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-31 23:27:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-31 23:27:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-31 23:27:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-31 23:27:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-31 23:27:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-31 23:27:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-31 23:27:42.294][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-03-31 23:27:42.309][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-31 23:27:42.312][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-03-31 23:27:42.314][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-03-31 23:27:42.316][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-31 23:27:42.317][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-31 23:27:42.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-31 23:27:42.321][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-31 23:27:42.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-31 23:27:42.325][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-31 23:27:42.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
19.82 1.09 33.36
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.31 | 2.86 | 229.50 | |
| ChebiEntry | 0.71 | 0.01 | 0.73 | |