Multiple platform build/check report for BioC 3.20 - BUILD results for UMI4Cats on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for UMI4Cats on merida1

To the developers/maintainers of the UMI4Cats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UMI4Cats.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: UMI4Cats

Version: 1.16.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UMI4Cats

StartedAt: 2025-03-31 22:45:34 -0400 (Mon, 31 Mar 2025)

EndedAt: 2025-03-31 22:47:58 -0400 (Mon, 31 Mar 2025)

EllapsedTime: 144.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UMI4Cats
###
##############################################################################
##############################################################################


* checking for file ‘UMI4Cats/DESCRIPTION’ ... OK
* preparing ‘UMI4Cats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UMI4Cats.Rmd’ using rmarkdown
186 reads; of these:
  186 (100.00%) were unpaired; of these:
    23 (12.37%) aligned 0 times
    154 (82.80%) aligned exactly 1 time
    9 (4.84%) aligned >1 times
87.63% overall alignment rate
98 reads; of these:
  98 (100.00%) were unpaired; of these:
    17 (17.35%) aligned 0 times
    78 (79.59%) aligned exactly 1 time
    3 (3.06%) aligned >1 times
82.65% overall alignment rate

Quitting from UMI4Cats.Rmd:356-388 [make-umi4c]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! vector memory limit of 64.0 Gb reached, see mem.maxVSize()
---
Backtrace:
    ▆
 1. ├─colData %>% ...
 2. ├─tidyr::separate(...)
 3. └─tidyr:::separate.data.frame(...)
 4.   └─tidyr:::str_separate(...)
 5.     └─tidyr:::str_split_fixed(...)
 6.       └─tidyr:::simplifyPieces(pieces, n, fill == "left")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'UMI4Cats.Rmd' failed with diagnostics:
vector memory limit of 64.0 Gb reached, see mem.maxVSize()
--- failed re-building ‘UMI4Cats.Rmd’

SUMMARY: processing the following file failed:
  ‘UMI4Cats.Rmd’

Error: Vignette re-building failed.
Execution halted