Hervé Pagès
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SparseArray |
| git_branch: RELEASE_3_20 |
| git_last_commit: 89a7e4b |
| git_last_commit_date: 2025-02-18 19:32:03 -0400 (Tue, 18 Feb 2025) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:36 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2010/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SparseArray 1.6.2 (landing page) Hervé Pagès
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the SparseArray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SparseArray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SparseArray |
| Version: 1.6.2 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL SparseArray |
| StartedAt: 2025-03-31 20:16:27 -0000 (Mon, 31 Mar 2025) |
| EndedAt: 2025-03-31 20:17:37 -0000 (Mon, 31 Mar 2025) |
| EllapsedTime: 69.4 seconds |
| RetCode: 0 |
| Status: OK |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL SparseArray
###
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* installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’
* installing *source* package ‘SparseArray’ ...
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o
ExtendableJaggedArray.c: In function ‘_move_ExtendableJaggedArrays_to_SVT’:
ExtendableJaggedArray.c:129:25: warning: ‘nzvals_p’ may be used uninitialized [-Wmaybe-uninitialized]
129 | free(nzvals_p);
| ^~~~~~~~~~~~~~
ExtendableJaggedArray.c:111:22: note: ‘nzvals_p’ was declared here
111 | int *nzvals_p, *nzoffs_p;
| ^~~~~~~~
ExtendableJaggedArray.c:125:25: warning: ‘nzoffs_p’ may be used uninitialized [-Wmaybe-uninitialized]
125 | free(nzoffs_p);
| ^~~~~~~~~~~~~~
ExtendableJaggedArray.c:111:33: note: ‘nzoffs_p’ was declared here
111 | int *nzvals_p, *nzoffs_p;
| ^~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c IRanges_stubs.c -o IRanges_stubs.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c OPBufTree.c -o OPBufTree.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c R_init_SparseArray.c -o R_init_SparseArray.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c Rvector_summarization.c -o Rvector_summarization.o
Rvector_summarization.c:1370:12: warning: ‘count_NA_list_elts’ defined but not used [-Wunused-function]
1370 | static int count_NA_list_elts(SEXP x)
| ^~~~~~~~~~~~~~~~~~
Rvector_summarization.c:1360:12: warning: ‘any_NA_list_elt’ defined but not used [-Wunused-function]
1360 | static int any_NA_list_elt(SEXP x)
| ^~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c Rvector_utils.c -o Rvector_utils.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c S4Vectors_stubs.c -o S4Vectors_stubs.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SBT_utils.c -o SBT_utils.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_Arith_methods.c -o SparseArray_Arith_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_Compare_methods.c -o SparseArray_Compare_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_Logic_methods.c -o SparseArray_Logic_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_abind.c -o SparseArray_abind.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_aperm.c -o SparseArray_aperm.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_matrixStats.c -o SparseArray_matrixStats.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_misc_methods.c -o SparseArray_misc_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_subassignment.c -o SparseArray_subassignment.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_subassignment_OLD.c -o SparseArray_subassignment_OLD.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_subsetting.c -o SparseArray_subsetting.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseArray_summarization.c -o SparseArray_summarization.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseMatrix_mult.c -o SparseMatrix_mult.o
SparseMatrix_mult.c:346:13: warning: ‘crossprod2_doublemat_doubleSV’ defined but not used [-Wunused-function]
346 | static void crossprod2_doublemat_doubleSV(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SparseMatrix_mult.c:306:13: warning: ‘crossprod2_doubleSV_doublemat’ defined but not used [-Wunused-function]
306 | static void crossprod2_doubleSV_doublemat(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseVec.c -o SparseVec.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseVec_Arith.c -o SparseVec_Arith.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseVec_Compare.c -o SparseVec_Compare.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseVec_Logic.c -o SparseVec_Logic.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseVec_Math.c -o SparseVec_Math.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c SparseVec_dotprod.c -o SparseVec_dotprod.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c XVector_stubs.c -o XVector_stubs.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c argcheck_utils.c -o argcheck_utils.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c coerceVector2.c -o coerceVector2.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c leaf_utils.c -o leaf_utils.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c randomSparseArray.c -o randomSparseArray.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c readSparseCSV.c -o readSparseCSV.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c rowsum_methods.c -o rowsum_methods.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c sparseMatrix_utils.c -o sparseMatrix_utils.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c test.c -o test.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R-4.4.3/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.3/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.4.3/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.3/site-library/XVector/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c thread_control.c -o thread_control.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -shared -L/home/biocbuild/R/R-4.4.3/lib -L/usr/local/lib -o SparseArray.so ExtendableJaggedArray.o IRanges_stubs.o OPBufTree.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Arith_methods.o SparseArray_Compare_methods.o SparseArray_Complex_methods.o SparseArray_Logic_methods.o SparseArray_Math_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_dim_tuning.o SparseArray_matrixStats.o SparseArray_misc_methods.o SparseArray_subassignment.o SparseArray_subassignment_OLD.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o SparseVec.o SparseVec_Arith.o SparseVec_Compare.o SparseVec_Logic.o SparseVec_Math.o SparseVec_dotprod.o XVector_stubs.o argcheck_utils.o coerceVector2.o leaf_utils.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o thread_control.o -fopenmp -L/home/biocbuild/R/R-4.4.3/lib -lR
installing to /home/biocbuild/R/R-4.4.3/site-library/00LOCK-SparseArray/00new/SparseArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SparseArray)