Chengcheng Ma
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/RGSEA |
| git_branch: RELEASE_3_20 |
| git_last_commit: 967e464 |
| git_last_commit_date: 2024-10-29 09:52:48 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:34 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1740/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RGSEA 1.40.0 (landing page) Chengcheng Ma
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the RGSEA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RGSEA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RGSEA |
| Version: 1.40.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RGSEA |
| StartedAt: 2025-04-01 06:09:45 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 06:09:59 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 13.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RGSEA
###
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* checking for file ‘RGSEA/DESCRIPTION’ ... OK
* preparing ‘RGSEA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RGSEA.Rnw’ using knitr
Quitting from RGSEA.Rnw:83-87 [RGSEA-DOWNLOAD]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'colnames': error in evaluating the argument 'object' in selecting a method for function 'Table': HTTP 403 Forbidden.
---
Backtrace:
x
1. +-GEOquery::GDS2eSet(getGEO("GDS4100"))
2. | +-base::grep("GSM", colnames(Table(GDS)))
3. | | \-base::is.factor(x)
4. | +-BiocGenerics::colnames(Table(GDS))
5. | \-GEOquery::Table(GDS)
6. +-GEOquery::getGEO("GDS4100")
7. | \-GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
8. | \-GEOquery:::downloadFile(myurl, destfile, mode)
9. | \-base::tryCatch(...)
10. | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
11. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. | \-value[[3L]](cond)
13. | \-base::message(e)
14. | +-base::withRestarts(...)
15. | | \-base (local) withOneRestart(expr, restarts[[1L]])
16. | | \-base (local) doWithOneRestart(return(expr), restart)
17. | \-base::signalCondition(cond)
18. +-base (local) `<fn>`(`<ht2__403>`)
19. \-base::.handleSimpleError(...)
20. \-base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RGSEA.Rnw' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'colnames': error in evaluating the argument 'object' in selecting a method for function 'Table': HTTP 403 Forbidden.
--- failed re-building ‘RGSEA.Rnw’
SUMMARY: processing the following file failed:
‘RGSEA.Rnw’
Error: Vignette re-building failed.
Execution halted