Multiple platform build/check report for BioC 3.20 - BUILD results for MethReg on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MethReg on merida1

To the developers/maintainers of the MethReg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MethReg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MethReg

Version: 1.16.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MethReg

StartedAt: 2025-03-31 19:56:23 -0400 (Mon, 31 Mar 2025)

EndedAt: 2025-03-31 19:59:08 -0400 (Mon, 31 Mar 2025)

EllapsedTime: 164.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MethReg
###
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* checking for file ‘MethReg/DESCRIPTION’ ... OK
* preparing ‘MethReg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MethReg.Rmd’ using rmarkdown

Quitting from MethReg.Rmd:334-345 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! vector memory limit of 64.0 Gb reached, see mem.maxVSize()
---
Backtrace:
     ▆
  1. ├─MethReg::create_triplet_distance_based(...)
  2. │ └─MethReg::get_region_target_gene(...)
  3. │   └─MethReg:::get_distance_region_target(out, genome = genome)
  4. │     └─MethReg::make_granges_from_names(names = region.target.info$regionID)
  5. │       └─... %>% makeGRangesFromDataFrame()
  6. ├─GenomicRanges::makeGRangesFromDataFrame(.)
  7. ├─tidyr::separate(., col = ".", into = c("chr", "start", "end"))
  8. └─tidyr:::separate.data.frame(...)
  9.   └─tidyr:::str_separate(...)
 10.     └─tidyr:::str_split_fixed(...)
 11.       └─tidyr:::simplifyPieces(pieces, n, fill == "left")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MethReg.Rmd' failed with diagnostics:
vector memory limit of 64.0 Gb reached, see mem.maxVSize()
--- failed re-building ‘MethReg.Rmd’

SUMMARY: processing the following file failed:
  ‘MethReg.Rmd’

Error: Vignette re-building failed.
Execution halted