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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:IsoCorrectoRGUI.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings IsoCorrectoRGUI_1.22.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/IsoCorrectoRGUI.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IsoCorrectoRGUI/DESCRIPTION’ ... OK
* this is package ‘IsoCorrectoRGUI’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IsoCorrectoRGUI’ can be installed ... WARNING
Found the following significant warnings:
  Warning: no DISPLAY variable so Tk is not available
See ‘/home/biocbuild/bbs-3.20-bioc/meat/IsoCorrectoRGUI.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘IsoCorrectoRGUI-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IsoCorrectionGUI
> ### Title: Graphical User Interface for IsoCorrectoR
> ### Aliases: IsoCorrectionGUI
> 
> ### ** Examples
> 
> 
>  IsoCorrectionGUI()
Error in structure(.External(.C_dotTcl, ...), class = "tclObj") : 
  [tcl] invalid command name "ttk::style".
Calls: IsoCorrectionGUI -> initGUI -> .Tcl -> structure
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ── Error ('test_parameter_propagation.R:60:3'): check propagation of modified input values ──
  Error in `structure(.External(.C_dotTcl, ...), class = "tclObj")`: [tcl] invalid command name "ttk::style".
  
  Backtrace:
      ▆
   1. ├─testthat::expect_equal(...) at test_parameter_propagation.R:60:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─IsoCorrectoRGUI:::initGUI(testmode = "modified_input")
   5.   └─tcltk::.Tcl("ttk::style theme use default")
   6.     └─base::structure(.External(.C_dotTcl, ...), class = "tclObj")
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 WARNING
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/IsoCorrectoRGUI.Rcheck/00check.log’
for details.

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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL IsoCorrectoRGUI
###
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* installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’
* installing *source* package ‘IsoCorrectoRGUI’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: no DISPLAY variable so Tk is not available
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: no DISPLAY variable so Tk is not available
** testing if installed package can be loaded from final location
Warning: no DISPLAY variable so Tk is not available
** testing if installed package keeps a record of temporary installation path
* DONE (IsoCorrectoRGUI)

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(IsoCorrectoRGUI)
IsoCorrectoRGUI v1.22.0

For help, type browseVignettes('IsoCorrectoRGUI') to view the IsoCorrectoRGUI documentation or ?IsoCorrectionGUI
to view the documentation of the IsoCorrectionGUI() function.

IsoCorrectoRGUI is licensed under GPL-3. It is free software and comes without any warranty.

If you use IsoCorrectoRGUI in published research, please cite:

Paul Heinrich, Christian Kohler et al.
Correction for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution multiple-tracer-data from stable isotope labeling experiments using IsoCorrectoR (Scientific reports, 2018)


Warning message:
no DISPLAY variable so Tk is not available 
> 
> test_check("IsoCorrectoRGUI")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_parameter_propagation.R:29:3'): check propagation of default input values ──
Error in `structure(.External(.C_dotTcl, ...), class = "tclObj")`: [tcl] invalid command name "ttk::style".

Backtrace:
    ▆
 1. ├─testthat::expect_equal(initGUI(testmode = "default_input"), correctionValues) at test_parameter_propagation.R:29:3
 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 4. └─IsoCorrectoRGUI:::initGUI(testmode = "default_input")
 5.   └─tcltk::.Tcl("ttk::style theme use default")
 6.     └─base::structure(.External(.C_dotTcl, ...), class = "tclObj")
── Error ('test_parameter_propagation.R:60:3'): check propagation of modified input values ──
Error in `structure(.External(.C_dotTcl, ...), class = "tclObj")`: [tcl] invalid command name "ttk::style".

Backtrace:
    ▆
 1. ├─testthat::expect_equal(...) at test_parameter_propagation.R:60:3
 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 4. └─IsoCorrectoRGUI:::initGUI(testmode = "modified_input")
 5.   └─tcltk::.Tcl("ttk::style theme use default")
 6.     └─base::structure(.External(.C_dotTcl, ...), class = "tclObj")

[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted