Manuela Hummel
| Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/GlobalAncova |
| git_branch: devel |
| git_last_commit: bac6c17 |
| git_last_commit_date: 2024-04-30 10:14:34 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 856/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GlobalAncova 4.23.0 (landing page) Manuela Hummel
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
|
To the developers/maintainers of the GlobalAncova package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GlobalAncova.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GlobalAncova |
| Version: 4.23.0 |
| Command: rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.23.0.tar.gz |
| StartedAt: 2024-07-16 06:15:58 -0400 (Tue, 16 Jul 2024) |
| EndedAt: 2024-07-16 06:16:38 -0400 (Tue, 16 Jul 2024) |
| EllapsedTime: 40.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GlobalAncova_4.23.0.zip |
| PackageFileSize: 1.358 MiB |
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### Running command:
###
### rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.23.0.tar.gz
###
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* installing *source* package 'GlobalAncova' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'row_orth2d':
GlobalAncova.c:33:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
33 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
34 | (*sD)*(*sD)*sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:38:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
38 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
39 | (*sD)*(*sD)*sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:43:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
43 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
44 | (*zD)*(*sD)*sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:48:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
48 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
49 | (*zD)*(*zD)*sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c: In function 'genewiseGA':
GlobalAncova.c:88:54: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
88 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
89 | (*zxx)*(*zD_full) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:100:56: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
100 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
101 | (*zxx)*(*zD_red) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:148:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
148 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
149 | (*zrr) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:153:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
153 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
154 | (*zrr) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:158:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
158 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
159 | (*n_test_genes) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:163:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
163 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
164 | (*sD_full)*(*sD_full) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:170:50: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
170 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
171 | (*N_Subjects) * sizeof(int));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c: In function 'permut':
GlobalAncova.c:250:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
250 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
251 | (*zrr) * sizeof(double) );
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:255:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
255 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
256 | (*zrr) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:260:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
260 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
261 | (*n_test_genes) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:265:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
265 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
266 | (*sD_full)*(*sD_full) * sizeof(double));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c:272:50: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
272 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~^
| |
| int
| %lld
273 | (*N_Subjects) * sizeof(int));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long unsigned int
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:177:8: warning: 'ord_perm' may be used uninitialized [-Wmaybe-uninitialized]
177 | sample ( ord_perm , N_Subjects ) ;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:166:8: note: 'ord_perm' was declared here
166 | int *ord_perm ;
| ^~~~~~~~
GlobalAncova.c: In function 'permut':
GlobalAncova.c:280:8: warning: 'ord_perm' may be used uninitialized [-Wmaybe-uninitialized]
280 | sample ( ord_perm , N_Subjects ) ;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:268:8: note: 'ord_perm' was declared here
268 | int *ord_perm ;
| ^~~~~~~~
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ludcmp.c -o ludcmp.o
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matrix.c -o matrix.o
gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/meat/GlobalAncova.buildbin-libdir/00LOCK-GlobalAncova/00new/GlobalAncova/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GlobalAncova' as GlobalAncova_4.23.0.zip
* DONE (GlobalAncova)