Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-04-02 19:30 -0400 (Wed, 02 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 708/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
FELLA 1.26.0 (landing page) Sergio Picart-Armada
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the FELLA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FELLA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: FELLA |
Version: 1.26.0 |
Command: chmod a+r FELLA -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data FELLA |
StartedAt: 2025-03-31 18:55:41 -0400 (Mon, 31 Mar 2025) |
EndedAt: 2025-03-31 18:58:35 -0400 (Mon, 31 Mar 2025) |
EllapsedTime: 173.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r FELLA -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data FELLA ### ############################################################################## ############################################################################## * checking for file 'FELLA/DESCRIPTION' ... OK * preparing 'FELLA': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'musmusculus.Rmd' using rmarkdown Quitting from musmusculus.Rmd:41-67 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.getUrl()`: ! Bad Request (HTTP 400). --- Backtrace: x 1. \-FELLA::buildGraphFromKEGGREST(...) 2. \-plyr::alply(...) 3. \-plyr::llply(...) 4. +-plyr:::loop_apply(n, do.ply) 5. \-plyr (local) `<fn>`(1L) 6. \-FELLA (local) .fun(piece, ...) 7. \-KEGGREST::keggLink(row[1], row[2]) 8. \-KEGGREST:::.getUrl(url, .listParser, nameColumn = 1, valueColumn = 2) 9. \-httr::stop_for_status(response) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'musmusculus.Rmd' failed with diagnostics: Bad Request (HTTP 400). --- failed re-building 'musmusculus.Rmd' --- re-building 'quickstart.Rmd' using rmarkdown --- finished re-building 'quickstart.Rmd' --- re-building 'zebrafish.Rmd' using rmarkdown Quitting from zebrafish.Rmd:50-74 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.getUrl()`: ! Bad Request (HTTP 400). --- Backtrace: x 1. \-FELLA::buildGraphFromKEGGREST(organism = "dre", filter.path = c("01100")) 2. \-plyr::alply(...) 3. \-plyr::llply(...) 4. +-plyr:::loop_apply(n, do.ply) 5. \-plyr (local) `<fn>`(1L) 6. \-FELLA (local) .fun(piece, ...) 7. \-KEGGREST::keggLink(row[1], row[2]) 8. \-KEGGREST:::.getUrl(url, .listParser, nameColumn = 1, valueColumn = 2) 9. \-httr::stop_for_status(response) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'zebrafish.Rmd' failed with diagnostics: Bad Request (HTTP 400). --- failed re-building 'zebrafish.Rmd' --- re-building 'FELLA.Rnw' using Sweave Building through KEGGREST... Available gene annotations: ncbi-geneid, ncbi-proteinid. Using ncbi-geneid Error: processing vignette 'FELLA.Rnw' failed with diagnostics: chunk 2 (label = 01_graph) Error in .getUrl(url, .listParser, nameColumn = 1, valueColumn = 2) : Bad Request (HTTP 400). --- failed re-building 'FELLA.Rnw' SUMMARY: processing the following files failed: 'musmusculus.Rmd' 'zebrafish.Rmd' 'FELLA.Rnw' Error: Vignette re-building failed. Execution halted