Multiple platform build/check report for BioC 3.20 - BUILD results for BiocParallel on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4764
palomino8	Windows Server 2022 Datacenter	x64	4.4.3 (2025-02-28 ucrt) -- "Trophy Case"	4495
merida1	macOS 12.7.5 Monterey	x86_64	4.4.3 (2025-02-28) -- "Trophy Case"	4522
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.3 (2025-02-28) -- "Trophy Case"	4449
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.3 (2025-02-28) -- "Trophy Case"	4426
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BiocParallel on palomino8

To the developers/maintainers of the BiocParallel package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocParallel.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocParallel

Version: 1.40.1

Command: chmod a+r BiocParallel -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocParallel

StartedAt: 2025-03-31 17:37:08 -0400 (Mon, 31 Mar 2025)

EndedAt: 2025-03-31 17:37:21 -0400 (Mon, 31 Mar 2025)

EllapsedTime: 13.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r BiocParallel -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocParallel
###
##############################################################################
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* checking for file 'BiocParallel/DESCRIPTION' ... OK
* preparing 'BiocParallel':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'BiocParallel' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/cpp11/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cpp11.cpp -o cpp11.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/cpp11/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ipcmutex.cpp -o ipcmutex.o
In file included from ipcmutex.cpp:14:
boost_patch_1_87/interprocess/managed_shared_memory.hpp:25:10: fatal error: boost_patch_1_87/interprocess/detail/managed_memory_impl.hpp: No such file or directory
   25 | #include <boost_patch_1_87/interprocess/detail/managed_memory_impl.hpp>
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [F:/biocbuild/bbs-3.20-bioc/R/etc/x64/Makeconf:296: ipcmutex.o] Error 1
ERROR: compilation failed for package 'BiocParallel'
* removing 'F:/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWIJB3i/Rinstee50580e26cb/BiocParallel'
      -----------------------------------
ERROR: package installation failed