Ramon Diaz-Uriarte
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/ADaCGH2 |
| git_branch: RELEASE_3_20 |
| git_last_commit: 831a7a7 |
| git_last_commit_date: 2024-10-29 09:35:07 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:29 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 14/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ADaCGH2 2.46.0 (landing page) Ramon Diaz-Uriarte
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the ADaCGH2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ADaCGH2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ADaCGH2 |
| Version: 2.46.0 |
| Command: rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=ADaCGH2.buildbin-libdir ADaCGH2_2.46.0.tar.gz |
| StartedAt: 2025-04-01 07:37:36 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 07:38:44 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 67.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: ADaCGH2_2.46.0.zip |
| PackageFileSize: 1.052 MiB |
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### Running command:
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### rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=ADaCGH2.buildbin-libdir ADaCGH2_2.46.0.tar.gz
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* installing *source* package 'ADaCGH2' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable]
65 | double totalNorm;
| ^~~~~~~~~
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:152:43: warning: "/*" within comment [-Wcomment]
152 | }/* for j */
|
r_haarseg.c:176:43: warning: "/*" within comment [-Wcomment]
176 | }/* for j */
|
r_haarseg.c:128:16: warning: unused variable 'j' [-Wunused-variable]
128 | int k,j;
| ^
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:98:26: warning: 'lowWeightSum' may be used uninitialized [-Wmaybe-uninitialized]
98 | lowWeightSum += weight[k-1] - weight[lowEnd];
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:59:12: note: 'lowWeightSum' was declared here
59 | double lowWeightSum;
| ^~~~~~~~~~~~
r_haarseg.c:96:26: warning: 'lowNonNormed' may be used uninitialized [-Wmaybe-uninitialized]
96 | lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1];
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:63:12: note: 'lowNonNormed' was declared here
63 | double lowNonNormed;
| ^~~~~~~~~~~~
r_haarseg.c:97:27: warning: 'highNonNormed' may be used uninitialized [-Wmaybe-uninitialized]
97 | highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1];
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:64:12: note: 'highNonNormed' was declared here
64 | double highNonNormed;
| ^~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o ADaCGH2.dll tmp.def init.o r_haarseg.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/ADaCGH2.buildbin-libdir/00LOCK-ADaCGH2/00new/ADaCGH2/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ADaCGH2' as ADaCGH2_2.46.0.zip
* DONE (ADaCGH2)