msdata 0.7.0
Steffen Neumann
| Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/msdata | | Last Changed Rev: 3281 / Revision: 3391 | | Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | WARNINGS | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ WARNINGS ] | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings msdata_0.7.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘msdata/DESCRIPTION’ ... OK
* this is package ‘msdata’ version ‘0.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘msdata’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
installed size is 36.2Mb
sub-directories of 1Mb or more:
cdf 3.5Mb
fticr 5.8Mb
iontrap 1.7Mb
lockmass 4.1Mb
microtofq 16.8Mb
mzid 3.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found directory ‘R’ with no source files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Error in tools:::.check_packages_used(package = "msdata") :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
* checking S3 generic/method consistency ... WARNING
Error in tools::checkS3methods(package = "msdata") :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... WARNING
Error in tools::checkReplaceFuns(package = "msdata") :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
* checking foreign function calls ... NOTE
Error in tools::checkFF(package = "msdata", registration = FALSE, check_DUP = TRUE) :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error in tools::codoc(package = "msdata") :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
Error in tools::codocClasses(package = "msdata") :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
* checking Rd \usage sections ... NOTE
Error in tools::checkDocStyle(package = "msdata") :
directory '/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/msdata' does not contain R code
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s/5s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 WARNINGs, 4 NOTEs
See
‘/Users/biocbuild/bbs-3.2-data-experiment/meat/msdata.Rcheck/00check.log’
for details.