| Back to the "Build/check report" |
This page was generated on 2016-04-23 10:55:02 -0700 (Sat, 23 Apr 2016).
| Package 80/257 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| facopy.annot 0.104.0 David Mosen-Ansorena
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] |  |
| Package: facopy.annot |
| Version: 0.104.0 |
| Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.104.0.tar.gz |
| StartedAt: 2016-04-20 11:22:56 -0700 (Wed, 20 Apr 2016) |
| EndedAt: 2016-04-20 11:23:20 -0700 (Wed, 20 Apr 2016) |
| EllapsedTime: 24.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: facopy.annot.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.104.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.104.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.
facopy.annot.Rcheck/00install.out:
* installing *source* package ‘facopy.annot’ ... ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (facopy.annot)
facopy.annot.Rcheck/facopy.annot-Ex.timings:
| name | user | system | elapsed | |
| hg18_armLimits | 0.021 | 0.000 | 0.020 | |
| hg18_db_gsk_bladder | 0.015 | 0.000 | 0.014 | |
| hg18_db_gsk_blood | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_bone | 0.012 | 0.000 | 0.012 | |
| hg18_db_gsk_brain | 0.016 | 0.000 | 0.016 | |
| hg18_db_gsk_breast | 0.019 | 0.000 | 0.019 | |
| hg18_db_gsk_cervix | 0.014 | 0.000 | 0.015 | |
| hg18_db_gsk_cns | 0.019 | 0.000 | 0.018 | |
| hg18_db_gsk_colon | 0.013 | 0.003 | 0.018 | |
| hg18_db_gsk_connective_tissue | 0.013 | 0.000 | 0.013 | |
| hg18_db_gsk_esophagus | 0.014 | 0.000 | 0.014 | |
| hg18_db_gsk_eye | 0.004 | 0.000 | 0.003 | |
| hg18_db_gsk_kidney | 0.014 | 0.000 | 0.014 | |
| hg18_db_gsk_liver | 0.018 | 0.000 | 0.018 | |
| hg18_db_gsk_lung | 0.021 | 0.000 | 0.021 | |
| hg18_db_gsk_muscle | 0.012 | 0.000 | 0.012 | |
| hg18_db_gsk_ovary | 0.016 | 0.000 | 0.015 | |
| hg18_db_gsk_pancreas | 0.014 | 0.000 | 0.013 | |
| hg18_db_gsk_pharynx | 0.011 | 0.000 | 0.011 | |
| hg18_db_gsk_placenta | 0.013 | 0.000 | 0.014 | |
| hg18_db_gsk_prostate | 0.015 | 0.000 | 0.015 | |
| hg18_db_gsk_rectum | 0.011 | 0.000 | 0.011 | |
| hg18_db_gsk_sarcoma | 0.009 | 0.000 | 0.009 | |
| hg18_db_gsk_stomach | 0.013 | 0.000 | 0.013 | |
| hg18_db_gsk_synovium | 0.003 | 0.000 | 0.003 | |
| hg18_db_gsk_thyroid | 0.010 | 0.003 | 0.014 | |
| hg18_db_gsk_uterus | 0.015 | 0.000 | 0.015 | |
| hg18_db_nci60 | 0.023 | 0.000 | 0.023 | |
| hg18_db_tcga_blca | 0.021 | 0.000 | 0.021 | |
| hg18_db_tcga_brca | 0.022 | 0.000 | 0.022 | |
| hg18_db_tcga_cesc | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_coad | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_gbm | 0.037 | 0.000 | 0.037 | |
| hg18_db_tcga_hnsc | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_kirc | 0.020 | 0.000 | 0.021 | |
| hg18_db_tcga_kirp | 0.019 | 0.000 | 0.019 | |
| hg18_db_tcga_lgg | 0.019 | 0.000 | 0.019 | |
| hg18_db_tcga_lihc | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_luad | 0.021 | 0.000 | 0.020 | |
| hg18_db_tcga_lusc | 0.019 | 0.000 | 0.019 | |
| hg18_db_tcga_ov | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_prad | 0.017 | 0.000 | 0.017 | |
| hg18_db_tcga_read | 0.017 | 0.004 | 0.021 | |
| hg18_db_tcga_stad | 0.020 | 0.000 | 0.021 | |
| hg18_db_tcga_thca | 0.016 | 0.000 | 0.016 | |
| hg18_db_tcga_ucec | 0.02 | 0.00 | 0.02 | |
| hg18_feature_cancergene | 0.001 | 0.003 | 0.005 | |
| hg18_feature_ensembl | 0.144 | 0.000 | 0.144 | |
| hg18_feature_lincRNA | 0.020 | 0.000 | 0.019 | |
| hg18_feature_mirnas | 0.006 | 0.000 | 0.005 | |
| hg18_feature_oncogene | 0.005 | 0.000 | 0.005 | |
| hg18_feature_tumorsupressor | 0.001 | 0.003 | 0.004 | |
| hg19_armLimits | 0.002 | 0.001 | 0.003 | |
| hg19_db_gsk_bladder | 0.016 | 0.000 | 0.016 | |
| hg19_db_gsk_blood | 0.024 | 0.000 | 0.024 | |
| hg19_db_gsk_bone | 0.012 | 0.000 | 0.012 | |
| hg19_db_gsk_brain | 0.015 | 0.000 | 0.016 | |
| hg19_db_gsk_breast | 0.017 | 0.000 | 0.020 | |
| hg19_db_gsk_cervix | 0.017 | 0.001 | 0.017 | |
| hg19_db_gsk_cns | 0.017 | 0.000 | 0.017 | |
| hg19_db_gsk_colon | 0.017 | 0.000 | 0.018 | |
| hg19_db_gsk_connective_tissue | 0.014 | 0.000 | 0.013 | |
| hg19_db_gsk_esophagus | 0.015 | 0.000 | 0.016 | |
| hg19_db_gsk_eye | 0.004 | 0.000 | 0.004 | |
| hg19_db_gsk_kidney | 0.014 | 0.000 | 0.014 | |
| hg19_db_gsk_liver | 0.017 | 0.000 | 0.018 | |
| hg19_db_gsk_lung | 0.025 | 0.000 | 0.024 | |
| hg19_db_gsk_muscle | 0.012 | 0.000 | 0.013 | |
| hg19_db_gsk_ovary | 0.015 | 0.000 | 0.014 | |
| hg19_db_gsk_pancreas | 0.014 | 0.000 | 0.015 | |
| hg19_db_gsk_pharynx | 0.012 | 0.000 | 0.011 | |
| hg19_db_gsk_placenta | 0.015 | 0.000 | 0.015 | |
| hg19_db_gsk_prostate | 0.016 | 0.000 | 0.016 | |
| hg19_db_gsk_rectum | 0.012 | 0.000 | 0.011 | |
| hg19_db_gsk_sarcoma | 0.008 | 0.000 | 0.009 | |
| hg19_db_gsk_stomach | 0.014 | 0.000 | 0.013 | |
| hg19_db_gsk_synovium | 0.005 | 0.000 | 0.006 | |
| hg19_db_gsk_thyroid | 0.010 | 0.003 | 0.014 | |
| hg19_db_gsk_uterus | 0.014 | 0.001 | 0.014 | |
| hg19_db_nci60 | 0.022 | 0.000 | 0.022 | |
| hg19_db_tcga_blca | 0.024 | 0.000 | 0.025 | |
| hg19_db_tcga_brca | 0.023 | 0.000 | 0.022 | |
| hg19_db_tcga_cesc | 0.024 | 0.000 | 0.032 | |
| hg19_db_tcga_coad | 0.023 | 0.000 | 0.027 | |
| hg19_db_tcga_gbm | 0.025 | 0.000 | 0.024 | |
| hg19_db_tcga_hnsc | 0.023 | 0.000 | 0.023 | |
| hg19_db_tcga_kirc | 0.020 | 0.003 | 0.024 | |
| hg19_db_tcga_kirp | 0.024 | 0.000 | 0.024 | |
| hg19_db_tcga_lgg | 0.021 | 0.000 | 0.020 | |
| hg19_db_tcga_lihc | 0.024 | 0.000 | 0.025 | |
| hg19_db_tcga_luad | 0.027 | 0.000 | 0.028 | |
| hg19_db_tcga_lusc | 0.022 | 0.000 | 0.022 | |
| hg19_db_tcga_ov | 0.020 | 0.000 | 0.024 | |
| hg19_db_tcga_prad | 0.022 | 0.000 | 0.029 | |
| hg19_db_tcga_read | 0.022 | 0.000 | 0.027 | |
| hg19_db_tcga_stad | 0.025 | 0.000 | 0.025 | |
| hg19_db_tcga_thca | 0.018 | 0.000 | 0.018 | |
| hg19_db_tcga_ucec | 0.022 | 0.000 | 0.022 | |
| hg19_feature_cancergene | 0.006 | 0.000 | 0.006 | |
| hg19_feature_ensembl | 0.371 | 0.000 | 0.378 | |
| hg19_feature_lincRNA | 0.021 | 0.000 | 0.021 | |
| hg19_feature_mirnas | 0.01 | 0.00 | 0.01 | |
| hg19_feature_oncogene | 0.005 | 0.000 | 0.004 | |
| hg19_feature_tumorsupressor | 0.004 | 0.000 | 0.004 | |
| mm8_armLimits | 0.003 | 0.000 | 0.003 | |
| mm8_feature_ensembl | 0.306 | 0.008 | 0.313 | |
| mm8_feature_mirnas | 0.008 | 0.000 | 0.008 | |