SpikeIn 1.12.0
Rafael A. Irizarry
| Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/SpikeIn | | Last Changed Rev: 3460 / Revision: 3730 | | Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf SpikeIn.buildbin-libdir SpikeIn.Rcheck && mkdir SpikeIn.buildbin-libdir SpikeIn.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SpikeIn.buildbin-libdir SpikeIn_1.12.0.tar.gz >SpikeIn.Rcheck\00install.out 2>&1 && cp SpikeIn.Rcheck\00install.out SpikeIn-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=SpikeIn.buildbin-libdir --install="check:SpikeIn-install.out" --force-multiarch --no-vignettes --timings SpikeIn_1.12.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SpikeIn/DESCRIPTION' ... OK
* this is package 'SpikeIn' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpikeIn' can be installed ... OK
* checking installed package size ... NOTE
installed size is 63.1Mb
sub-directories of 1Mb or more:
data 63.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found directory 'R' with no source files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Error in tools:::.check_packages_used(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
* checking S3 generic/method consistency ... WARNING
Error in tools::checkS3methods(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
Error in tools::checkReplaceFuns(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... NOTE
Error in tools::checkFF(package = "SpikeIn", registration = FALSE, check_DUP = TRUE) :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error in tools::codoc(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
Error in tools::codocClasses(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
* checking Rd \usage sections ... NOTE
Error in tools::checkDocStyle(package = "SpikeIn") :
directory 'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.buildbin-libdir/SpikeIn' does not contain R code
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: package needs dependence on R (>= 2.10)
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 5 WARNINGs, 4 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/SpikeIn.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'SpikeIn' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'SpikeIn' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SpikeIn' as SpikeIn_1.12.0.zip
* DONE (SpikeIn)