HSMMSingleCell 0.104.0
Cole Trapnell
| Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/HSMMSingleCell | | Last Changed Rev: 3460 / Revision: 3473 | | Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf HSMMSingleCell.buildbin-libdir HSMMSingleCell.Rcheck && mkdir HSMMSingleCell.buildbin-libdir HSMMSingleCell.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HSMMSingleCell.buildbin-libdir HSMMSingleCell_0.104.0.tar.gz >HSMMSingleCell.Rcheck\00install.out 2>&1 && cp HSMMSingleCell.Rcheck\00install.out HSMMSingleCell-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=HSMMSingleCell.buildbin-libdir --install="check:HSMMSingleCell-install.out" --force-multiarch --no-vignettes --timings HSMMSingleCell_0.104.0.tar.gz
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* using log directory 'C:/biocbld/bbs-3.2-data-experiment/meat/HSMMSingleCell.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HSMMSingleCell/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HSMMSingleCell' version '0.104.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HSMMSingleCell' can be installed ... OK
* checking installed package size ... NOTE
installed size is 16.1Mb
sub-directories of 1Mb or more:
data 16.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
'HSMM_expr_matrix' 'HSMM_sample_sheet' 'HSMM_gene_annotation'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
HSMM_expr_matrix.rda 15.6Mb 9.0Mb xz
HSMM_gene_annotation.rda 451Kb 286Kb xz
* checking files in 'vignettes' ... NOTE
The following files look like leftovers/mistakes:
'HSMMSingleCell-vignette.bbl', 'HSMMSingleCell-vignette.log',
'HSMMSingleCell-vignette.toc'
Please remove them from your package.
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
'C:/biocbld/bbs-3.2-data-experiment/meat/HSMMSingleCell.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'HSMMSingleCell' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'HSMMSingleCell' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HSMMSingleCell' as HSMMSingleCell_0.104.0.zip
* DONE (HSMMSingleCell)