ChAMPdata 1.8.0
Tiffany Morris
| Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/ChAMPdata | | Last Changed Rev: 3460 / Revision: 3730 | | Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf ChAMPdata.buildbin-libdir ChAMPdata.Rcheck && mkdir ChAMPdata.buildbin-libdir ChAMPdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChAMPdata.buildbin-libdir ChAMPdata_1.8.0.tar.gz >ChAMPdata.Rcheck\00install.out 2>&1 && cp ChAMPdata.Rcheck\00install.out ChAMPdata-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ChAMPdata.buildbin-libdir --install="check:ChAMPdata-install.out" --force-multiarch --no-vignettes --timings ChAMPdata_1.8.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/ChAMPdata.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChAMPdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChAMPdata' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChAMPdata' can be installed ... OK
* checking installed package size ... NOTE
installed size is 245.6Mb
sub-directories of 1Mb or more:
data 122.0Mb
extdata 123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: bloodCtl.Rd:162-164: Dropping empty section \details
prepare_Rd: bloodCtl.Rd:165-167: Dropping empty section \source
prepare_Rd: bloodCtl.Rd:168-170: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
'multi.hit' 'snp.hit'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
Data codoc mismatches from documentation object 'probe.features':
Variables in data frame 'probe.features'
Code: CHR MAPINFO arm cgi conserved_tfbs distancetoGene feat.cgi
feature gene
Docs: CHR MAPINFO arm cgi feat.cgi feature feature.1 feature.2
feature.3 feature.4 gene.1 gene.2 gene.3 gene.4
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [38s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
ChAMPdata-package 22.41 0.28 22.69
testDataSet 12.50 0.14 12.63
** running examples for arch 'x64' ... [36s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
ChAMPdata-package 21.58 0.15 21.75
testDataSet 11.38 0.17 11.55
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/ChAMPdata.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'ChAMPdata' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'ChAMPdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChAMPdata' as ChAMPdata_1.8.0.zip
* DONE (ChAMPdata)