BioC 3.2: CHECK report for spkTools on moscato1
This page was generated on 2016-04-23 10:16:51 -0700 (Sat, 23 Apr 2016).
spkTools 1.26.0
Matthew N McCall
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/spkTools | | Last Changed Rev: 109589 / Revision: 116712 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
Summary
| Package: spkTools
|
| Version: 1.26.0
|
| Command: rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.26.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.26.0.tar.gz
|
| StartedAt: 2016-04-23 07:51:04 -0700 (Sat, 23 Apr 2016)
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| EndedAt: 2016-04-23 07:54:07 -0700 (Sat, 23 Apr 2016)
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| EllapsedTime: 183.1 seconds
|
| RetCode: 0
|
| Status: OK
|
| CheckDir: spkTools.Rcheck
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| Warnings: 0
|
Command output
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###
### Running command:
###
### rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.26.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.26.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/spkTools.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spkTools/DESCRIPTION' ... OK
* this is package 'spkTools' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spkTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [62s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
spkAll 22.89 0.05 23.38
spkTools 22.82 0.06 22.90
spkGNN 7.22 0.00 7.22
** running examples for arch 'x64' ... [51s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
spkAll 18.92 0.07 19.17
spkTools 17.77 0.11 17.88
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbld/bbs-3.2-bioc/meat/spkTools.Rcheck/00check.log'
for details.
spkTools.Rcheck/00install.out:
install for i386
* installing *source* package 'spkTools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'spkTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spkTools' as spkTools_1.26.0.zip
* DONE (spkTools)
spkTools.Rcheck/examples_i386/spkTools-Ex.timings:
| name | user | system | elapsed
|
| SpikeInExpressSet-class | 0.2 | 0.0 | 0.2 |
|
| plotSpkBox | 0.85 | 0.06 | 0.91 |
|
| spkAccSD | 0.37 | 0.00 | 0.37 |
|
| spkAll | 22.89 | 0.05 | 23.38 |
|
| spkAnova | 0.09 | 0.01 | 0.11 |
|
| spkBal | 0.09 | 0.00 | 0.10 |
|
| spkBox | 0.92 | 0.05 | 0.96 |
|
| spkDensity | 0.24 | 0.00 | 0.24 |
|
| spkGNN | 7.22 | 0.00 | 7.22 |
|
| spkMA | 1.98 | 0.00 | 1.98 |
|
| spkPair | 0.28 | 0.01 | 0.30 |
|
| spkPairNS | 0.17 | 0.02 | 0.19 |
|
| spkPot | 1.13 | 0.00 | 1.12 |
|
| spkQuantile | 0.17 | 0.00 | 0.17 |
|
| spkSlope | 0.16 | 0.00 | 0.34 |
|
| spkTools | 22.82 | 0.06 | 22.90 |
|
| spkVar | 0.09 | 0.00 | 0.10 |
|
| summarySpkBox | 0.86 | 0.02 | 0.87 |
|
spkTools.Rcheck/examples_x64/spkTools-Ex.timings:
| name | user | system | elapsed
|
| SpikeInExpressSet-class | 0.23 | 0.00 | 0.25 |
|
| plotSpkBox | 1.55 | 0.03 | 1.66 |
|
| spkAccSD | 0.44 | 0.01 | 0.45 |
|
| spkAll | 18.92 | 0.07 | 19.17 |
|
| spkAnova | 0.11 | 0.00 | 0.11 |
|
| spkBal | 0.12 | 0.00 | 0.12 |
|
| spkBox | 0.94 | 0.04 | 0.99 |
|
| spkDensity | 0.22 | 0.02 | 0.23 |
|
| spkGNN | 4.93 | 0.00 | 4.93 |
|
| spkMA | 1.49 | 0.01 | 1.51 |
|
| spkPair | 0.21 | 0.00 | 0.21 |
|
| spkPairNS | 0.18 | 0.02 | 0.20 |
|
| spkPot | 0.94 | 0.00 | 1.14 |
|
| spkQuantile | 0.10 | 0.00 | 0.11 |
|
| spkSlope | 0.13 | 0.00 | 0.13 |
|
| spkTools | 17.77 | 0.11 | 17.88 |
|
| spkVar | 0.12 | 0.00 | 0.12 |
|
| summarySpkBox | 1.23 | 0.01 | 1.25 |
|