spade 1.18.0
Zach Bjornson
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/spade | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |  |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | ERROR | OK | |
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### Running command:
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### chmod a+r spade -R && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spade
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* checking for file 'spade/DESCRIPTION' ... OK
* preparing 'spade':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: Rclusterpp
Loading required package: Rcpp
Loading required package: RcppEigen
Loading required package: flowCore
Attaching package: 'flowCore'
The following objects are masked from 'package:igraph':
normalize, parent, tree
Loading required package: lattice
Downsampling file: C:/biocbld/bbs-3.2-bioc/tmpdir/RtmpWcRJRL/Rinst1f90276a3552/spade/extdata/SimulatedRawData.fcs
Warning in write.FCS(out_frame, outfilename) :
'write.FCS' is not fully tested and should be considered as experimental.
Targeting 4924 events for C:\biocbld\bbs-3.2-bioc\tmpdir\RtmpWiiNgt/SimulatedRawData.fcs.density.fcs
Warning in write.FCS(out_frame, outfilename) :
'write.FCS' is not fully tested and should be considered as experimental.
Clustering files...
Error: processing vignette 'SPADE.Rnw' failed with diagnostics:
chunk 5 (label = runSPADE)
Error in eval(expr, envir, enclos) :
Empty keyword name detected!If it is due to the double delimiters in keyword value, please set emptyValue to FALSE and try again!
Execution halted