BioC 3.2: CHECK report for roar on windows1.bioconductor.org

Package: roar

Version: 1.6.0

Command: rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.6.0.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.6.0.tar.gz

StartedAt: 2015-10-27 05:14:15 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 05:17:44 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 208.7 seconds

RetCode: 0

Status:  OK

CheckDir: roar.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf roar.buildbin-libdir roar.Rcheck && mkdir roar.buildbin-libdir roar.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=roar.buildbin-libdir roar_1.6.0.tar.gz >roar.Rcheck\00install.out 2>&1 && cp roar.Rcheck\00install.out roar-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=roar.buildbin-libdir --install="check:roar-install.out" --force-multiarch --no-vignettes --timings roar_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/roar.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'roar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'roar' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'roar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
** running examples for arch 'x64' ... [12s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [14s]
 [14s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [18s]
 [18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'roar' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'roar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'roar' as roar_1.6.0.zip
* DONE (roar)

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.35	0.07	0.40
RoarDatasetFromFiles-constructor	0.01	0.00	0.02
computePairedPvals-method	1.13	0.01	1.14
computePvals-method	0.50	0.02	0.51
computeRoars-method	0.41	0.04	0.45
countPrePost-method	0.44	0.05	0.49
countResults-method	0.44	0.05	0.48
fpkmResults-method	0.56	0.00	0.57
pvalueCorrectFilter-method	0.44	0.04	0.48
pvalueFilter-method	0.48	0.00	0.48
standardFilter-method	0.45	0.00	0.45
totalResults-method	0.55	0.00	0.55

name	user	system	elapsed
RoarDataset-class	0	0	0
RoarDataset-constructor	0.36	0.03	0.39
RoarDatasetFromFiles-constructor	0	0	0
computePairedPvals-method	0.77	0.02	0.78
computePvals-method	0.51	0.01	0.53
computeRoars-method	0.58	0.00	0.58
countPrePost-method	0.48	0.02	0.50
countResults-method	0.69	0.00	0.69
fpkmResults-method	0.76	0.01	0.78
pvalueCorrectFilter-method	0.50	0.02	0.51
pvalueFilter-method	0.48	0.06	0.55
standardFilter-method	0.50	0.02	0.52
totalResults-method	0.50	0.01	0.51