BioC 3.2: CHECK report for mogsa on moscato1

Package: mogsa

Version: 1.2.1

Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.2.1.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.2.1.tar.gz

StartedAt: 2016-04-23 04:55:13 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 05:00:07 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 293.8 seconds

RetCode: 0

Status:  OK

CheckDir: mogsa.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.2.1.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.2.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/mogsa.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [25s] OK
** running examples for arch 'x64' ... [35s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
mbpca 6.93   0.03    6.96
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.2.1.zip
* DONE (mogsa)

name	user	system	elapsed
GIS	1.14	0.00	1.14
annotate.gs	0.44	0.00	0.44
bootMbpca	0	0	0
box.gs.feature	0.69	0.00	0.68
combine-methods	0.56	0.00	0.56
decompose.gs.group	0.47	0.02	0.49
decompose.gs.ind	0.45	0.00	0.45
distMoa	0.5	0.0	0.5
getmgsa	0.34	0.00	0.34
matpower	0	0	0
mbpca	4.51	0.01	4.53
mgsa-class	0.51	0.00	0.51
moGap	2.34	0.02	2.36
moa-class	0.19	0.00	0.18
moa	0.17	0.01	0.19
moa.sup-class	0.16	0.00	0.15
moaCoef	0.43	0.00	0.44
moaScore	0.5	0.0	0.5
mogsa-package	0.53	0.00	0.53
mogsa	0.61	0.02	0.62
pairwise.rv	0.28	0.00	0.28
plotGS	0.20	0.00	0.21
prepGraphite	0.16	0.01	0.50
prepMsigDB	0.02	0.00	0.01
prepSupMoa	1.87	0.03	1.91
softK	0	0	0
sup.moa	0.92	0.00	0.95
wsvd	0.02	0.00	0.02

name	user	system	elapsed
GIS	1.17	0.02	1.18
annotate.gs	0.57	0.00	0.56
bootMbpca	0	0	0
box.gs.feature	0.45	0.01	0.47
combine-methods	0.66	0.02	0.67
decompose.gs.group	0.53	0.01	0.55
decompose.gs.ind	0.19	0.00	0.19
distMoa	0.89	0.00	0.89
getmgsa	0.73	0.02	0.74
matpower	0	0	0
mbpca	6.93	0.03	6.96
mgsa-class	0.71	0.02	0.73
moGap	3.51	0.01	3.53
moa-class	0.24	0.00	0.23
moa	0.34	0.03	0.37
moa.sup-class	0.34	0.00	0.35
moaCoef	0.86	0.02	0.87
moaScore	0.86	0.03	0.89
mogsa-package	1.47	0.00	1.47
mogsa	0.67	0.02	0.68
pairwise.rv	0.04	0.00	0.05
plotGS	0.58	0.00	0.58
prepGraphite	0.27	0.00	0.26
prepMsigDB	0	0	0
prepSupMoa	1.97	0.03	2.00
softK	0.02	0.00	0.01
sup.moa	0.95	0.00	0.95
wsvd	0	0	0