BioC 3.2: CHECK report for hypergraph on oaxaca

Package: hypergraph

Version: 1.42.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings hypergraph_1.42.0.tar.gz

StartedAt: 2016-04-23 01:15:15 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 01:15:44 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 28.9 seconds

RetCode: 0

Status:  OK

CheckDir: hypergraph.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings hypergraph_1.42.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/hypergraph.Rcheck’
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hypergraph/DESCRIPTION’ ... OK
* this is package ‘hypergraph’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hypergraph’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘hypergraph_unit_tests.R’ [2s/2s]
 [2s/2s] OK
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘hypergraph’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘head’ from package ‘utils’ in package ‘hypergraph’
Creating a generic function for ‘tail’ from package ‘utils’ in package ‘hypergraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (hypergraph)

name	user	system	elapsed
DirectedHyperedge-class	0.001	0.000	0.001
Hyperedge-class	0.001	0.001	0.001
Hypergraph-class	0.005	0.000	0.006
kCores	0.012	0.001	0.014
l2hel	0.001	0.000	0.001
vCover	0.007	0.001	0.007