flowWorkspace 3.16.16
Greg Finak ,Mike Jiang
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/flowWorkspace | | Last Changed Rev: 116464 / Revision: 116712 | | Last Changed Date: 2016-04-18 11:18:54 -0700 (Mon, 18 Apr 2016) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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###
### Running command:
###
### rm -rf flowWorkspace.buildbin-libdir flowWorkspace.Rcheck && mkdir flowWorkspace.buildbin-libdir flowWorkspace.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowWorkspace.buildbin-libdir flowWorkspace_3.16.16.tar.gz >flowWorkspace.Rcheck\00install.out 2>&1 && cp flowWorkspace.Rcheck\00install.out flowWorkspace-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=flowWorkspace.buildbin-libdir --install="check:flowWorkspace-install.out" --force-multiarch --no-vignettes --timings flowWorkspace_3.16.16.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/flowWorkspace.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowWorkspace/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowWorkspace' version '3.16.16'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowWorkspace' can be installed ... OK
* checking installed package size ... NOTE
installed size is 17.5Mb
sub-directories of 1Mb or more:
libs 13.1Mb
tests 2.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'gridExtra'
A package should be listed in only one of these fields.
Versioned 'LinkingTo' value for 'BH' is only usable in R >= 3.0.2
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'RSVGTipsDevice' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Namespace in Imports field not imported from: 'graphics'
All declared Imports should be used.
Unexported objects imported by ':::' calls:
'Rgraphviz:::getRenderPar' 'flowCore:::checkClass'
'flowCore:::copyFlowSet' 'flowCore:::guid'
'flowUtils:::smartTreeParse' 'graph:::.makeEdgeKeys'
'lattice:::updateList' 'ncdfFlow:::.isValidSamples'
'stats:::.splinefun'
See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
'.addTrans' '.load_gs' '.uuid_gen' 'isNegated'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GatingSet,GatingHierarchy-character : .local: warning in
list.files(pattern = paste("^", file, "$", sep = ""), path = path,
recursive = TRUE, full = TRUE): partial argument match of 'full' to
'full.names'
getGate,GatingSetList-character : .local: warning in unlist(res, recur
= FALSE): partial argument match of 'recur' to 'recursive'
.addGatingHierarchies: no visible global function definition for
'read.ncdfFlowSet'
.addGatingHierarchies : <anonymous>: no visible global function
definition for 'flowFrame'
.addGatingHierarchies: no visible global function definition for
'flowSet'
.computeCV : <anonymous>: no visible binding for global variable
'flowJo.count'
.computeCV : <anonymous>: no visible binding for global variable
'flowCore.count'
.getTransformations : <anonymous> : f : <anonymous>: no visible binding
for global variable 'max_val'
.getTransformations : <anonymous> : f : <anonymous>: no visible binding
for global variable 'decade'
.getTransformations : <anonymous> : f : <anonymous>: no visible binding
for global variable 'min_val'
.getTransformations : <anonymous>: multiple local function definitions
for 'f' with different formal arguments
.parse.pData: no visible binding for global variable '.'
.preprocessMap: no visible binding for global variable 'old'
.preprocessMap: no visible binding for global variable '.'
.preprocessor: no visible binding for global variable 'groupName'
.renderNodes.svgAnno: no visible global function definition for 'nodes'
GatingSetList: no visible global function definition for 'ncdfFlowList'
addGate: no visible binding for global variable 'id'
addGate: no visible binding for global variable 'gate_id'
addGate: no visible binding for global variable 'fcs'
addGate: no visible binding for global variable 'gate_def'
compare.counts: no visible binding for global variable 'population'
compare.counts: no visible global function definition for '.'
compare.counts: no visible binding for global variable 'fcs_filename'
compare.counts: no visible binding for global variable 'count'
constructTree: no visible binding for global variable 'id'
extend.polygonGate : <anonymous>: no visible binding for global
variable 'y'
extend.polygonGate : <anonymous>: no visible binding for global
variable 'x'
extend.polygonGate: no visible binding for global variable 'id'
extend.polygonGate: no visible binding for global variable 'is.smaller'
extend.polygonGate: no visible binding for global variable 'is.tail'
extend.polygonGate: no visible binding for global variable 'is.head'
parse.gatingML: no visible global function definition for
'read.ncdfFlowSet'
read.gatingML.cytobank: no visible binding for global variable 'id'
read.gatingML.cytobank: no visible binding for global variable
'comp_ref'
getData,GatingSetList-ANY: no visible global function definition for
'ncdfFlowList'
getGate,GatingHierarchy-character : .local: no visible global function
definition for 'ellipsoidGate'
getPopStats,GatingHierarchy : .local: no visible binding for global
variable 'node'
pData<-,GatingSet-data.frame: no visible global function definition for
'varMetadata'
pData<-,GatingSet-data.frame: no visible global function definition for
'phenoData'
pData<-,GatingSet-data.frame: no visible global function definition for
'varMetadata<-'
pData<-,GatingSet-data.frame: no visible global function definition for
'phenoData<-'
rbind2,GatingSetList-missing: no visible global function definition for
'ncdfFlowList'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'subset.GatingSet':
'subset.GatingSet'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbld/bbs-3.2-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/i386/flowWorkspace.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'printf', possibly from 'printf' (C)
Found 'puts', possibly from 'printf' (C), 'puts' (C)
File 'D:/biocbld/bbs-3.2-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/x64/flowWorkspace.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'printf', possibly from 'printf' (C)
Found 'puts', possibly from 'printf' (C), 'puts' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [37s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
GatingHierarchy-class 2.2 0.07 25.43
** running examples for arch 'x64' ... [29s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
GatingHierarchy-class 2.9 0.09 20.12
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'run-all.R' [57s]
[58s] OK
** running tests for arch 'x64' ...
Running 'run-all.R' [42s]
[42s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 7 NOTEs
See
'D:/biocbld/bbs-3.2-bioc/meat/flowWorkspace.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'flowWorkspace' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c GatingHierarchy.cpp -o GatingHierarchy.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c GatingSet.cpp -o GatingSet.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c GatingSet.pb.cc -o GatingSet.pb.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c POPINDICES.cpp -o POPINDICES.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_API.cpp -o R_API.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_GatingSet.cpp -o R_GatingSet.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c calibrationTable.cpp -o calibrationTable.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c delimitedMessage.cpp -o delimitedMessage.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c flowData.cpp -o flowData.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c flowJoWorkspace.cpp -o flowJoWorkspace.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c gate.cpp -o gate.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c global.cpp -o global.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c nodeProperties.cpp -o nodeProperties.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c spline.cpp -o spline.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c transformation.cpp -o transformation.o
include/transformation.hpp: In constructor 'fasinhTrans::fasinhTrans()':
include/transformation.hpp:245:9: warning: 'fasinhTrans::length' will be initialized after [-Wreorder]
include/transformation.hpp:244:9: warning: 'double fasinhTrans::maxRange' [-Wreorder]
transformation.cpp:269:1: warning: when initialized here [-Wreorder]
include/transformation.hpp: In constructor 'fasinhTrans::fasinhTrans(double, double, double, double, double)':
include/transformation.hpp:245:9: warning: 'fasinhTrans::length' will be initialized after [-Wreorder]
include/transformation.hpp:244:9: warning: 'double fasinhTrans::maxRange' [-Wreorder]
transformation.cpp:273:1: warning: when initialized here [-Wreorder]
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
winFlowJoWorkspace.cpp:494:27: warning: "/*" within comment [-Wcomment]
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c workspace.cpp -o workspace.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c wsNode.cpp -o wsNode.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/archive_exception.cpp -o boost_serialization/archive_exception.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_archive.cpp -o boost_serialization/basic_archive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_iarchive.cpp -o boost_serialization/basic_iarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_iserializer.cpp -o boost_serialization/basic_iserializer.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_oarchive.cpp -o boost_serialization/basic_oarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_oserializer.cpp -o boost_serialization/basic_oserializer.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_pointer_iserializer.cpp -o boost_serialization/basic_pointer_iserializer.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_pointer_oserializer.cpp -o boost_serialization/basic_pointer_oserializer.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_serializer_map.cpp -o boost_serialization/basic_serializer_map.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_iprimitive.cpp -o boost_serialization/basic_text_iprimitive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_oprimitive.cpp -o boost_serialization/basic_text_oprimitive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_wiprimitive.cpp -o boost_serialization/basic_text_wiprimitive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_woprimitive.cpp -o boost_serialization/basic_text_woprimitive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_xml_archive.cpp -o boost_serialization/basic_xml_archive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_iarchive.cpp -o boost_serialization/binary_iarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_oarchive.cpp -o boost_serialization/binary_oarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_wiarchive.cpp -o boost_serialization/binary_wiarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_woarchive.cpp -o boost_serialization/binary_woarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/codecvt_null.cpp -o boost_serialization/codecvt_null.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/extended_type_info.cpp -o boost_serialization/extended_type_info.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/extended_type_info_no_rtti.cpp -o boost_serialization/extended_type_info_no_rtti.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/extended_type_info_typeid.cpp -o boost_serialization/extended_type_info_typeid.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/polymorphic_iarchive.cpp -o boost_serialization/polymorphic_iarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/polymorphic_oarchive.cpp -o boost_serialization/polymorphic_oarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/stl_port.cpp -o boost_serialization/stl_port.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_iarchive.cpp -o boost_serialization/text_iarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_oarchive.cpp -o boost_serialization/text_oarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_wiarchive.cpp -o boost_serialization/text_wiarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_woarchive.cpp -o boost_serialization/text_woarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/utf8_codecvt_facet.cpp -o boost_serialization/utf8_codecvt_facet.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/void_cast.cpp -o boost_serialization/void_cast.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_archive_exception.cpp -o boost_serialization/xml_archive_exception.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_grammar.cpp -o boost_serialization/xml_grammar.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_iarchive.cpp -o boost_serialization/xml_iarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_oarchive.cpp -o boost_serialization/xml_oarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_wgrammar.cpp -o boost_serialization/xml_wgrammar.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_wiarchive.cpp -o boost_serialization/xml_wiarchive.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//i386/include/libxml2 -Iboost_serialization -Ic:/protobuf//i386/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_woarchive.cpp -o boost_serialization/xml_woarchive.o
g++ -m32 -shared -s -static-libgcc -o flowWorkspace.dll tmp.def GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o delimitedMessage.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o boost_serialization/archive_exception.o boost_serialization/basic_archive.o boost_serialization/basic_iarchive.o boost_serialization/basic_iserializer.o boost_serialization/basic_oarchive.o boost_serialization/basic_oserializer.o boost_serialization/basic_pointer_iserializer.o boost_serialization/basic_pointer_oserializer.o boost_serialization/basic_serializer_map.o boost_serialization/basic_text_iprimitive.o boost_serialization/basic_text_oprimitive.o boost_serialization/basic_text_wiprimitive.o boost_serialization/basic_text_woprimitive.o boost_serialization/basic_xml_archive.o boost_serialization/binary_iarchive.o boost_serialization/binary_oarchive.o boost_serialization/binary_wiarchive.o boost_serialization/binary_woarchive.o boost_serialization/codecvt_null.o boost_serialization/extended_type_info.o boost_serialization/extended_type_info_no_rtti.o boost_serialization/extended_type_info_typeid.o boost_serialization/polymorphic_iarchive.o boost_serialization/polymorphic_oarchive.o boost_serialization/stl_port.o boost_serialization/text_iarchive.o boost_serialization/text_oarchive.o boost_serialization/text_wiarchive.o boost_serialization/text_woarchive.o boost_serialization/utf8_codecvt_facet.o boost_serialization/void_cast.o boost_serialization/xml_archive_exception.o boost_serialization/xml_grammar.o boost_serialization/xml_iarchive.o boost_serialization/xml_oarchive.o boost_serialization/xml_wgrammar.o boost_serialization/xml_wiarchive.o boost_serialization/xml_woarchive.o c:/libxml2//i386/lib/libxml2.a c:/protobuf//i386/lib/libprotobuf.a D:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/i386/libboost_regex.a -lws2_32 -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'flowWorkspace' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c GatingHierarchy.cpp -o GatingHierarchy.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c GatingSet.cpp -o GatingSet.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c GatingSet.pb.cc -o GatingSet.pb.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c POPINDICES.cpp -o POPINDICES.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_API.cpp -o R_API.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c R_GatingSet.cpp -o R_GatingSet.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c calibrationTable.cpp -o calibrationTable.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c delimitedMessage.cpp -o delimitedMessage.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c flowData.cpp -o flowData.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c flowJoWorkspace.cpp -o flowJoWorkspace.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c gate.cpp -o gate.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c global.cpp -o global.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c nodeProperties.cpp -o nodeProperties.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c spline.cpp -o spline.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c transformation.cpp -o transformation.o
include/transformation.hpp: In constructor 'fasinhTrans::fasinhTrans()':
include/transformation.hpp:245:9: warning: 'fasinhTrans::length' will be initialized after [-Wreorder]
include/transformation.hpp:244:9: warning: 'double fasinhTrans::maxRange' [-Wreorder]
transformation.cpp:269:1: warning: when initialized here [-Wreorder]
include/transformation.hpp: In constructor 'fasinhTrans::fasinhTrans(double, double, double, double, double)':
include/transformation.hpp:245:9: warning: 'fasinhTrans::length' will be initialized after [-Wreorder]
include/transformation.hpp:244:9: warning: 'double fasinhTrans::maxRange' [-Wreorder]
transformation.cpp:273:1: warning: when initialized here [-Wreorder]
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
winFlowJoWorkspace.cpp:494:27: warning: "/*" within comment [-Wcomment]
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c workspace.cpp -o workspace.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c wsNode.cpp -o wsNode.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/archive_exception.cpp -o boost_serialization/archive_exception.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_archive.cpp -o boost_serialization/basic_archive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_iarchive.cpp -o boost_serialization/basic_iarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_iserializer.cpp -o boost_serialization/basic_iserializer.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_oarchive.cpp -o boost_serialization/basic_oarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_oserializer.cpp -o boost_serialization/basic_oserializer.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_pointer_iserializer.cpp -o boost_serialization/basic_pointer_iserializer.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_pointer_oserializer.cpp -o boost_serialization/basic_pointer_oserializer.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_serializer_map.cpp -o boost_serialization/basic_serializer_map.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_iprimitive.cpp -o boost_serialization/basic_text_iprimitive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_oprimitive.cpp -o boost_serialization/basic_text_oprimitive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_wiprimitive.cpp -o boost_serialization/basic_text_wiprimitive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_text_woprimitive.cpp -o boost_serialization/basic_text_woprimitive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/basic_xml_archive.cpp -o boost_serialization/basic_xml_archive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_iarchive.cpp -o boost_serialization/binary_iarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_oarchive.cpp -o boost_serialization/binary_oarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_wiarchive.cpp -o boost_serialization/binary_wiarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/binary_woarchive.cpp -o boost_serialization/binary_woarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/codecvt_null.cpp -o boost_serialization/codecvt_null.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/extended_type_info.cpp -o boost_serialization/extended_type_info.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/extended_type_info_no_rtti.cpp -o boost_serialization/extended_type_info_no_rtti.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/extended_type_info_typeid.cpp -o boost_serialization/extended_type_info_typeid.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/polymorphic_iarchive.cpp -o boost_serialization/polymorphic_iarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/polymorphic_oarchive.cpp -o boost_serialization/polymorphic_oarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/stl_port.cpp -o boost_serialization/stl_port.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_iarchive.cpp -o boost_serialization/text_iarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_oarchive.cpp -o boost_serialization/text_oarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_wiarchive.cpp -o boost_serialization/text_wiarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/text_woarchive.cpp -o boost_serialization/text_woarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/utf8_codecvt_facet.cpp -o boost_serialization/utf8_codecvt_facet.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/void_cast.cpp -o boost_serialization/void_cast.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_archive_exception.cpp -o boost_serialization/xml_archive_exception.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_grammar.cpp -o boost_serialization/xml_grammar.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_iarchive.cpp -o boost_serialization/xml_iarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_oarchive.cpp -o boost_serialization/xml_oarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_wgrammar.cpp -o boost_serialization/xml_wgrammar.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_wiarchive.cpp -o boost_serialization/xml_wiarchive.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -DROUT -Ic:/libxml2//x64/include/libxml2 -Iboost_serialization -Ic:/protobuf//x64/include -DLIBXML_STATIC -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_serialization/xml_woarchive.cpp -o boost_serialization/xml_woarchive.o
g++ -m64 -shared -s -static-libgcc -o flowWorkspace.dll tmp.def GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o delimitedMessage.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o boost_serialization/archive_exception.o boost_serialization/basic_archive.o boost_serialization/basic_iarchive.o boost_serialization/basic_iserializer.o boost_serialization/basic_oarchive.o boost_serialization/basic_oserializer.o boost_serialization/basic_pointer_iserializer.o boost_serialization/basic_pointer_oserializer.o boost_serialization/basic_serializer_map.o boost_serialization/basic_text_iprimitive.o boost_serialization/basic_text_oprimitive.o boost_serialization/basic_text_wiprimitive.o boost_serialization/basic_text_woprimitive.o boost_serialization/basic_xml_archive.o boost_serialization/binary_iarchive.o boost_serialization/binary_oarchive.o boost_serialization/binary_wiarchive.o boost_serialization/binary_woarchive.o boost_serialization/codecvt_null.o boost_serialization/extended_type_info.o boost_serialization/extended_type_info_no_rtti.o boost_serialization/extended_type_info_typeid.o boost_serialization/polymorphic_iarchive.o boost_serialization/polymorphic_oarchive.o boost_serialization/stl_port.o boost_serialization/text_iarchive.o boost_serialization/text_oarchive.o boost_serialization/text_wiarchive.o boost_serialization/text_woarchive.o boost_serialization/utf8_codecvt_facet.o boost_serialization/void_cast.o boost_serialization/xml_archive_exception.o boost_serialization/xml_grammar.o boost_serialization/xml_iarchive.o boost_serialization/xml_oarchive.o boost_serialization/xml_wgrammar.o boost_serialization/xml_wiarchive.o boost_serialization/xml_woarchive.o c:/libxml2//x64/lib/libxml2.a c:/protobuf//x64/lib/libprotobuf.a D:/biocbld/bbs-3.2-bioc/R/library/flowCore/lib/x64/libboost_regex.a -lws2_32 -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowWorkspace' as flowWorkspace_3.16.16.zip
* DONE (flowWorkspace)