flowCore 1.36.9
M.Jiang
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/flowCore | | Last Changed Rev: 112615 / Revision: 116712 | | Last Changed Date: 2016-01-15 14:16:32 -0800 (Fri, 15 Jan 2016) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf flowCore.buildbin-libdir && mkdir flowCore.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/flowCore_1.36.9.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=flowCore.buildbin-libdir --merge-multiarch flowCore_1.36.9.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL flowCore_1.36.9.zip && rm flowCore_1.36.9.tar.gz flowCore_1.36.9.zip
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install for i386
* installing *source* package 'flowCore' ...
** libs
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c FastLogicle.cpp -o FastLogicle.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c Hyperlog.cpp -o Hyperlog.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c Logicle.cpp -o Logicle.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c biexponential.c -o biexponential.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c convertRawBytes.cpp -o convertRawBytes.o
convertRawBytes.cpp: In function 'std::vector<double> convertRawBytes(BYTES, bool, std::vector<short unsigned int>, short unsigned int, bool)':
convertRawBytes.cpp:61:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:45:80: warning: multi-line comment [-Wcomment]
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c hyperlogTransform.cpp -o hyperlogTransform.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c inPolygon.c -o inPolygon.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c inPolytope.c -o inPolytope.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c logicleTransform.cpp -o logicleTransform.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c uint2double.cpp -o uint2double.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/icu.cpp -o boost_regex/icu.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/instances.cpp -o boost_regex/instances.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex.cpp -o boost_regex/regex.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
g++ -m32 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/i386"
ar rs "D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/i386/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
C:\Rtools33\gcc-4.6.3\bin\ar.exe: creating D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/i386/libboost_regex.a
g++ -m32 -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o convertRawBytes.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/i386/libboost_regex.a -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'HowTo-flowCore.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'flowCore' ...
** libs
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c FastLogicle.cpp -o FastLogicle.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c Hyperlog.cpp -o Hyperlog.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c Logicle.cpp -o Logicle.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c biexponential.c -o biexponential.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c convertRawBytes.cpp -o convertRawBytes.o
convertRawBytes.cpp: In function 'std::vector<double> convertRawBytes(BYTES, bool, std::vector<short unsigned int>, short unsigned int, bool)':
convertRawBytes.cpp:61:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:45:80: warning: multi-line comment [-Wcomment]
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c hyperlogTransform.cpp -o hyperlogTransform.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c inPolygon.c -o inPolygon.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c inPolytope.c -o inPolytope.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c logicleTransform.cpp -o logicleTransform.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c uint2double.cpp -o uint2double.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c zeroin.c -o zeroin.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/icu.cpp -o boost_regex/icu.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/instances.cpp -o boost_regex/instances.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex.cpp -o boost_regex/regex.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
g++ -m64 -std=c++0x -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I../inst/include/ -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/x64"
ar rs "D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/x64/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
C:\Rtools33\gcc-4.6.3\bin\ar.exe: creating D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/x64/libboost_regex.a
g++ -m64 -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o convertRawBytes.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/lib/x64/libboost_regex.a -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/flowCore.buildbin-libdir/flowCore/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowCore' as flowCore_1.36.9.zip
* DONE (flowCore)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'flowCore' successfully unpacked and MD5 sums checked