RefNet 1.6.0
Paul Shannon
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RefNet | | Last Changed Rev: 109589 / Revision: 109947 | | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |  |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | ERROR | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RefNet
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* checking for file ‘RefNet/DESCRIPTION’ ... OK
* preparing ‘RefNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
as.vector, cbind, colnames, do.call, duplicated, eval, evalq, get, grep,
grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unlist, unsplit
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: PSICQUIC
Loading required package: biomaRt
Loading required package: httr
Loading required package: plyr
Attaching package: ‘plyr’
The following object is masked from ‘package:IRanges’:
desc
The following object is masked from ‘package:S4Vectors’:
rename
Loading required package: AnnotationHub
Loading required package: RCurl
Loading required package: bitops
Loading required package: shiny
Warning in .loadRegistry() :
failed to get response from PSICQUIC registry at http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=ACTIVE&format=txt
snapshotDate(): 2015-08-26
loading from cache ‘/home/biocbuild/.AnnotationHub/27766’
loading from cache ‘/home/biocbuild/.AnnotationHub/27767’
loading from cache ‘/home/biocbuild/.AnnotationHub/27768’
loading from cache ‘/home/biocbuild/.AnnotationHub/27769’
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Attaching package: ‘Biobase’
The following object is masked from ‘package:AnnotationHub’:
cache
The following object is masked from ‘package:httr’:
content
Loading required package: DBI
Error: processing vignette 'RefNet.Rnw' failed with diagnostics:
chunk 12 (label = eliminateDups)
Error in addStandardNames(idMapper, tbl.8) :
error in evaluating the argument 'object' in selecting a method for function 'addStandardNames': Error: object 'idMapper' not found
Execution halted