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BioC 3.2: BUILD report for GenomeGraphs on perceval

This page was generated on 2015-11-10 14:46:06 -0800 (Tue, 10 Nov 2015).

Package 417/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomeGraphs 1.30.0
Steffen Durinck
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GenomeGraphs
Last Changed Rev: 109589 / Revision: 110496
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: GenomeGraphs
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomeGraphs
StartedAt: 2015-11-09 18:02:10 -0800 (Mon, 09 Nov 2015)
EndedAt: 2015-11-09 18:02:30 -0800 (Mon, 09 Nov 2015)
EllapsedTime: 19.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomeGraphs
###
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* checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK
* preparing ‘GenomeGraphs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: biomaRt
Loading required package: grid

Error: processing vignette 'GenomeGraphs.Rnw' failed with diagnostics:
 chunk 4 
Error : 1: Space required after the Public Identifier
2: SystemLiteral " or ' expected
3: SYSTEM or PUBLIC, the URI is missing
4: Opening and ending tag mismatch: hr line 7 and body
5: Opening and ending tag mismatch: body line 4 and html
6: Premature end of data in tag html line 2

Execution halted