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BioC 3.2: INSTALL report for GeneSelectMMD on moscato1

This page was generated on 2016-04-23 10:16:53 -0700 (Sat, 23 Apr 2016).

Package 409/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.14.0
Weiliang Qiu
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GeneSelectMMD
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelectMMD
Version: 2.14.0
Command: rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/GeneSelectMMD_2.14.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneSelectMMD.buildbin-libdir --merge-multiarch GeneSelectMMD_2.14.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL GeneSelectMMD_2.14.0.zip && rm GeneSelectMMD_2.14.0.tar.gz GeneSelectMMD_2.14.0.zip
StartedAt: 2016-04-22 17:47:46 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:49:52 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 126.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/GeneSelectMMD_2.14.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneSelectMMD.buildbin-libdir --merge-multiarch GeneSelectMMD_2.14.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL GeneSelectMMD_2.14.0.zip  && rm GeneSelectMMD_2.14.0.tar.gz GeneSelectMMD_2.14.0.zip
###
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install for i386

* installing *source* package 'GeneSelectMMD' ...
** libs
gfortran -m32     -O3  -mtune=core2 -c Qfunc.f -o Qfunc.o
gfortran -m32     -O3  -mtune=core2 -c blas.f -o blas.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c isnan.c -o isnan.o
gfortran -m32     -O3  -mtune=core2 -c lbfgsb.f -o lbfgsb.o
gfortran -m32     -O3  -mtune=core2 -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -m32     -O3  -mtune=core2 -c linpack.f -o linpack.o
gfortran -m32     -O3  -mtune=core2 -c llkhFun.f -o llkhFun.o
gfortran -m32     -O3  -mtune=core2 -c myTtest.f -o myTtest.o
gfortran -m32     -O3  -mtune=core2 -c paraEstLoop.f -o paraEstLoop.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c pt.c -o pt.o
gfortran -m32     -O3  -mtune=core2 -c timer.f -o timer.o
gfortran -m32     -O3  -mtune=core2 -c wiFun.f -o wiFun.o
gcc -m32 -shared -s -static-libgcc -o GeneSelectMMD.dll tmp.def Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -lgfortran -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GeneSelectMMD' ...
** libs
gfortran -m64     -O2  -mtune=core2 -c Qfunc.f -o Qfunc.o
gfortran -m64     -O2  -mtune=core2 -c blas.f -o blas.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c isnan.c -o isnan.o
gfortran -m64     -O2  -mtune=core2 -c lbfgsb.f -o lbfgsb.o
gfortran -m64     -O2  -mtune=core2 -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -m64     -O2  -mtune=core2 -c linpack.f -o linpack.o
gfortran -m64     -O2  -mtune=core2 -c llkhFun.f -o llkhFun.o
gfortran -m64     -O2  -mtune=core2 -c myTtest.f -o myTtest.o
gfortran -m64     -O2  -mtune=core2 -c paraEstLoop.f -o paraEstLoop.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c pt.c -o pt.o
gfortran -m64     -O2  -mtune=core2 -c timer.f -o timer.o
gfortran -m64     -O2  -mtune=core2 -c wiFun.f -o wiFun.o
gcc -m64 -shared -s -static-libgcc -o GeneSelectMMD.dll tmp.def Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -lgfortran -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneSelectMMD' as GeneSelectMMD_2.14.0.zip
* DONE (GeneSelectMMD)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'GeneSelectMMD' successfully unpacked and MD5 sums checked